VMD-L Mailing List

From: Nichols A. Romero (naromero_at_gmail.com)
Date: Mon Feb 26 2007 - 16:24:53 CST

Hi,

I am reporting a bug in VMD 1.8.5. I am running RHEL on an Intel 32-bit
system. I also have nVIDIA video card
but I don't believe any of these details are relevant since I can reproduce
this problem on SGI Altix (IA64)
system as well which is quite different from my desktop machine.

I am simply loading a Trajectory in DCD format and then trying to export the
coordinates to ANY format, e.g.
xyz, POSCAR, etc. I have run with the debug option and this is what I get.

(gdb) where
#0 0x0051b600 in strncpy () from /lib/tls/libc.so.6
#1 0x08142465 in MolFilePlugin::write_structure ()
#2 0x081020c7 in CoorPluginData::CoorPluginData ()
#3 0x0817219a in VMDApp::molecule_savetrajectory ()
#4 0x081b7186 in SaveTrajectoryFltkMenu::do_save ()
#5 0x083bde7c in Fl_Button::handle ()
#6 0x083ba310 in fl_throw_focus ()
#7 0x083ba402 in Fl::handle ()
#8 0x083cd057 in fl_handle ()
#9 0x083cc66e in Fl::remove_fd ()
#10 0x083cc890 in fl_wait ()
#11 0x083b9bb6 in Fl::wait ()
#12 0x0816e1fd in VMDApp::VMDupdate ()
#13 0x08184857 in main () 

-- 
Nichols A. Romero, Ph.D.
1613 Denise Dr. Apt. D
Forest Hill, MD 21050
443-567-8328 (C)
410-306-0709 (O)