VMD-L Mailing List

From: Ryan McGreevy (ryanmcgreevy_at_ks.uiuc.edu)
Date: Fri May 29 2015 - 14:18:19 CDT

Sorry, I just saw this mail. The issue you are having is due to how Windows
treats 32bit applications running on 64bit windows. If you 'ls' from the
tkconsole, you should notice that the output file appears to be there. You
can load it or run commands on it from the tkconsole/VMD as normal (i.e.
mol new 4ake-target_autopsf.situs should work). However, if you try to
navigate to that file in windows explorer, it won't appear to be there. The
actual output file should be written to the folder C:\Users\UserName\
AppData\Local\VirtualStore\Program Files (x86)\University of Illinois\VMD
where UserName is your windows user name, and assuming you performed a
default install. This is the folder that windows tricks VMD into thinking
is the normal C:/ path.

On Mon, May 11, 2015 at 3:01 AM sunyeping <sunyeping_at_aliyun.com> wrote:

> Hi, prof. Baltoumas and all,
>
>
> Thank you very much for the link.
>
>
> But I encounter a problem at the beginning with the tutorial. For the
> first simple example (the example of 4ake/1ake), I got the psf file, load
> the mdff package, but after I enter the command:
>
>
> set sel [atomselect top all]
>
> mdff sim $sel -res 5 -o 4ake-target_autopsf.situs
>
>
> I cound not get the output file 4ake-target_autopsf.situs. The TkConsole
> did not give any error message, but I just could not find the file in the
> working directory or VMD directory. I am running VMD in windows 7 system.
> Coud you help me with that?
>
>
> Thanks!
>
>
>
>
>
> Yeping Sun
>
> Institute of Microbiology, Chinese Academy of Sciences
>
>
> ------------------------------------------------------------------
>
> From:Fotis Baltoumas <fbaltoumas_at_biol.uoa.gr>
>
> Send Time:2015年5月11日(星期一) 14:23
>
> To:孙业平 <sunyeping_at_aliyun.com>
>
> Cc:vmd-l <vmd-l_at_ks.uiuc.edu>
>
> Subject:Re: vmd-l: where are the files provided with MDFF TUTORIAL?
>
>
> Hello,
>
>
> You can find all the MDFF tutorial files here:
>
>
> http://www.ks.uiuc.edu/Training/Tutorials/science/mdff/
>
>
>
> > Dear all,
>
> > Could you tell me where are the files provided with MDFF TUTORIAL? Are
>
> > they in the VMD install directory? But I can not find them in the VMD
>
> > directory in my computer. Or are they available for download somewhere?
>
> > Thanks!Yeping Sun
>
> > Institute of Microbiology, Chinese Academy of Sciences
>
>
>
> --
>
> *******************************************
>
> Fotis A. Baltoumas
>
> Msc Student, Bioinformatics Postgraduate Programme,
>
> Phd Candidate, Bioinformatics
>
> Department of Cell Biology and Biophysics
>
> Faculty of Biology, University of Athens
>
> Panepistimiopolis, Athens 157 01, GREECE
>
> --------------------------------------
>
>
> email : fbaltoumas_at_biol.uoa.gr
>
> http://biophysics.biol.uoa.gr
>
> http://bioinformatics.biol.uoa.gr
>
> *******************************************
>
>