VMD-L Mailing List

From: Ashar Malik (asharjm_at_gmail.com)
Date: Thu Mar 08 2018 - 13:21:20 CST

You can make selections out of your molecule.

Make a selection with no water.

E. g. In graphics > Representation

Use

all and not waters

Instead of just

all

VMD will know what waters are and will draw everything that is not a water
molecule.

Hopefully this will work.

On Mar 9, 2018 08:04, "Gu, Wenze" <wenze_gu_at_brown.edu> wrote:

Hi list,

I have a mdcrd file with a protein and a lot of water molecules. I want to
hide the water to see how the protein folds. However, I can only find
tutorials for removing water in pdb. Does anyone know how to hide water in
mdcrd file?

Best,
Wenze Gu
Department of Chemistry
Brown University