VMD-L Mailing List

From: Ajasja Ljubetič (ajasja.ljubetic_at_gmail.com)
Date: Tue Apr 16 2019 - 00:00:41 CDT

You can also download the biological assembly, which has the correct
oligomerisation state.
https://www.rcsb.org/3d-view/4V6B/1?preset=symmetry&sele=O

On Sat, 13 Apr 2019 at 12:07, Vermaas, Joshua <Joshua.Vermaas_at_nrel.gov>
wrote:

> Have you taken a look at the pdb header? The transformation matrices you
> need to generate the biological assembly are usually in the remarks at the
> top, which you can use in conjunction with the move command to make the
> biological assembly. Chimera has a tool that does this automatically (
> https://www.cgl.ucsf.edu/chimera/docs/UsersGuide/modelpanel.html).
>
> -Josh
>
>
>
> On 2019-04-12 20:42:59-06:00 owner-vmd-l_at_ks.uiuc.edu wrote:
>
> Dear all,
> I want to visualise the spherical structure of ferritin ( homo 24 - mer )
> in VMD. The pdb file contains only a monomer.
> How can I make to get the whole sphere in VMD ?
> Thank you !
>
>