VMD-L Mailing List

From: Hasan Mahmud (hasanmme_at_gmail.com)
Date: Tue Nov 19 2019 - 14:26:30 CST

Dear All,
I am new in VMD, I am going through the tutorial entitled "Residue-Based
Coarse Graining using MARTINI Force Field in NAMD". In this tutorial,
High-density Lipoprotein (HDL) atomistic PDB structure is converted to a
residue-based coarse grain model. At some point, I have to made a
correction for the protein segment using fix martini psf.tcl script.

I have used the same command following the manual, the commands are as
follows:
source fix martini psf.tcl
fix martini psf 0 martini-protein.top 01-CG-lipoprotein
autopsf.psf 01-CG-lipoprotein autopsf.pdb CG-fix martini psf 1
./05-scripts 1 -1

However, I am getting error message "couldn't execute
"..\05-scripts\dsspcmbi": no such file or directory"

I have copied the dsspcmbi file to the working directory, still getting the
same error message.

your help is appreciated.

Thank you!
*---------------------------*
Best Regards,
Khandakar Abu Hasan Al Mahmud
Multiscale Mechanics and Physics Lab
University of Texas At Arlington
682 5582560
*"your time is limited don't waste it living someone else's life"** --
Steve Jobs*