VMD-L Mailing List

From: Deng, Jinxia (Nancy) (jinxianancy.deng_at_zoetis.com)
Date: Tue Mar 01 2016 - 09:03:27 CST

Hi All,

I have a simple membrane system with water on both sides. The MD trajectory of 50ns (by NAMD) shows the membrane keep moving slowly till top of the unicell.

I played with the pbc plugin, trying various combinations including unwrap and join etc... But still could not keep membrane in its central position as I want.

I am wondering whether anyone would like to share with me your step-wise pbc combinations...

Looking forward to hearing from you.

Nancy