From: Elias Ahadi (eahadi_at_uwo.ca)
Date: Wed Oct 21 2009 - 11:36:39 CDT

Hello,

I am working on a project in which I am modeling a protein chain where each unit is 4.0 A apart. My question is how come VMD (v1.8.7) does not display the bond connectivity for such a simple model protein. Below is the model protein chain in question in PDB format.

If anyone knows of a technique that can be used to display the bonds in VMD, I would really appreciate it.

Thank you.
Elias

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HEADER
ATOM 1 C BEA 6 49.668 21.668 21.668
ATOM 2 C BEA 6 45.668 21.668 21.668
ATOM 3 C BEA 6 41.668 21.668 21.668
ATOM 4 C BEA 6 37.668 21.668 21.668
ATOM 5 C BEA 6 33.668 21.668 21.668
ATOM 6 C BEA 6 29.668 21.668 21.668
CONECT 1 2
CONECT 2 3
CONECT 3 4
CONECT 4 5
CONECT 5 6
END