VMD-L Mailing List

From: Myunggi Yi (myunggi_at_gmail.com)
Date: Mon Sep 21 2009 - 11:01:19 CDT

I found the way to add rep.

mol selection {name "B.*" and segid 1}
mol color ColorID 0
mol rep DynamicBonds
mol addrep 0

Is there a way to specify the distance cutoff for dynamics bonds?

On Mon, Sep 21, 2009 at 11:27 AM, Myunggi Yi <myunggi_at_gmail.com> wrote:

> Dear VMD users,
>
> I'd like to make a tcl script to load a molecule with trajectory in several
> graphic representations with different selections.
> I think I have seen some from the manual, but I can't find it.
>
> For example, I want to do
> > vmd -e load.tcl
>
> in load.tcl, I want to add several representations with
>
> name "B.*" and segid 1 (with dynamic bonds with a specific distance cutoff
> and color)
>
> Would anybody help me?
>
>
> --
> Best wishes,
>
> Myunggi Yi
> ==================================
> 91 Chieftan Way
> Institute of Molecular Biophysics
> Florida State University
> Tallahassee, FL 32306
>
> Office: +1-850-645-1334
>
> http://sites.google.com/site/myunggi/
> http://people.sc.fsu.edu/~myunggi/ <http://people.sc.fsu.edu/%7Emyunggi/>
>
> 

-- 
Best wishes,
Myunggi Yi
==================================
91 Chieftan Way
Institute of Molecular Biophysics
Florida State University
Tallahassee, FL 32306
Office: +1-850-645-1334
http://sites.google.com/site/myunggi/
http://people.sc.fsu.edu/~myunggi/