VMD-L Mailing List
From: John Stone (johns_at_ks.uiuc.edu)
Date: Tue Feb 26 2013 - 16:47:17 CST
- Next message: Sindrila Dutta Banik: "Problem related to the save trajectory]"
- Previous message: Bennion, Brian: "definition of single word "protein" selection"
- In reply to: yp sun: "delet a frame from dcd file"
- Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]
Hi,
There's not really a way to delete a single frame from an existing file,
but you could create a new trajectory file that contains all of
the frames except for the bad one. That's the easiest solution.
>From the sound of it, your trajectory file has been corrupted somehow,
perhaps when it was first written, or maybe due to a disk error later on.
Cheers,
John Stone
vmd_at_ks.uiuc.edu
On Sun, Feb 03, 2013 at 09:59:51AM +0800, yp sun wrote:
> Dear all,
>
> I find in a frame in the dcd file generated from a NAMD
> simulation having severe problems (one of the chains dispears from the
> structure). Do you know how to delet this fram from the dcd file?
>
> Best regard!
> Yeping Sun
> CAS Key Laboratory of Pathogenic Microbiology & Immunology
> INSTITUTE OF MICROBIOLOGY CHINESE ACADEMY OF SCIENCES
> NO.1 Beichen West Road,Chaoyang District,Beijing 100101,china
-- NIH Center for Macromolecular Modeling and Bioinformatics Beckman Institute for Advanced Science and Technology University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801 http://www.ks.uiuc.edu/~johns/ Phone: 217-244-3349 http://www.ks.uiuc.edu/Research/vmd/ Fax: 217-244-6078
- Next message: Sindrila Dutta Banik: "Problem related to the save trajectory]"
- Previous message: Bennion, Brian: "definition of single word "protein" selection"
- In reply to: yp sun: "delet a frame from dcd file"
- Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]