VMD-L Mailing List

From: David Schall (schall_at_usna.edu)
Date: Thu Sep 09 2004 - 16:20:47 CDT

Hi all,

Is there a way to set up distance cutoff in the "dynamic bonds"
representation to have independent values for pairs of atoms with
different types? I have figured out how to do it for pairs of like
atoms, say C-C, Si-Si, etc using "create rep". I just duplicate a
representation, select an atom type and then adjust the distance cutoff.
  Is there a similar way to set it up for pairs of atoms with different
types, say in my case C-Si?

Thanks for the help!

Prof. J. David Schall
Department of Chemistry
United States Naval Academy