VMD-L Mailing List

From: O'Reilly Science Art (oreillyscienceart_at_gmail.com)
Date: Thu Oct 05 2017 - 13:43:16 CDT

I use the Molecule File Browser window, and enter the pdb accession code (4
digit) after Filename. For Determine File Type I've tried both
"Automatically" and "Web PDB Download", so they are coming from the
databank.

On Thu, Oct 5, 2017 at 2:37 PM, Belkin, Maxim <mbelkin_at_illinois.edu> wrote:

> The problem you're having should not be VMD version-specific, so it would
> better to solve it for the latest version of VMD.
>
> How do you (attempt to) load molecules? Do you use VMD's GUI or command
> line? Are molecules in local PDB files or from the PDB Databank?
>
> Maxim
>
>
>
> On Oct 5, 2017, at 13:25, O'Reilly Science Art <
> oreillyscienceart_at_gmail.com> wrote:
>
> Thanks so much, that did allow me to open it, but both versions are still
> unable to load molecules. I am running MacOSX version 10.11.6 if that helps
> at all.
>
> Thanks!
> Mary
>
>
> On Thu, Oct 5, 2017 at 2:09 PM, Belkin, Maxim <mbelkin_at_illinois.edu>
> wrote:
>
>> Try moving VMD to /Applications folder and launch it from there.
>>
>> Maxim
>>
>>
>> On Oct 5, 2017, at 13:07, O'Reilly Science Art <
>> oreillyscienceart_at_gmail.com> wrote:
>>
>> Hi,
>>
>> I recently downloaded VMD 1.9.3 for MacOSX and I am unable to import pdb
>> structures. I just got an error message that says it is unable to load.
>>
>> And now I'm getting this error message: “startup.command” can’t be opened
>> because Sandbox is not allowed to open documents in Terminal.
>>
>> I tried going back to 1.9.2 and got the same results.
>>
>> Any suggestions?
>>
>> Thanks!
>> Mary
>>
>>
>>
>>
>> --
>> Mary O'Reilly, Ph.D
>>
>>
> 

-- 
Mary O'Reilly, Ph.D.
*Owner, O'Reilly Science Art, LLC*
*www.oreillyscienceart.com <http://www.oreillyscienceart.com>*