VMD-L Mailing List

From: Life Sciences Inc (contact.lifesciences.inc_at_gmail.com)
Date: Wed Oct 19 2016 - 11:33:32 CDT

Or if anyone can give me simple commands to do process through command line
..

On Wed, Oct 19, 2016 at 6:13 PM, Life Sciences Inc <
contact.lifesciences.inc_at_gmail.com> wrote:

> HI ALL
>
> I am trying to create a psf file and pdb file from autopsf , I am addding
> the charmm 36 force field for lipid and water molecules through topology
> file "top_all36_lipid.rtf". First I did solvation using Solvate tool of vmd
> and then I am loading the pdb file from solvate tool to be used in autopsf
> tool.
>
> Autopsf is making chains and everything is normal, but when the processing
> comes to the last chains of TIP3 water molecules somehow the tool is
> getting held and showing no error. I am using VMD 1.9.2 version.
>
> Is there any solution for this?
>
> Thanks
>
>
>
>