VMD-L Mailing List

From: Robert Johnson (robertjo_at_physics.upenn.edu)
Date: Thu Mar 28 2013 - 12:35:10 CDT

Sorry to resend this. There isn't any way that the solid clipping plane can
be rendered with Tachyon?
Thanks,
Bob

On Thu, Feb 28, 2013 at 5:29 PM, Robert Johnson
<robertjo_at_physics.upenn.edu>wrote:

> I see. So this can't be rendered with Tachyon?
>
>
> On Tue, Feb 26, 2013 at 2:06 PM, John Stone <johns_at_ks.uiuc.edu> wrote:
>
>> Hi,
>> As Chris pointed out already, this was done using the user-defined
>> clipping planes feature of VMD, with a solid clipping plane, and rendered
>> with POV-Ray. Control over coloring of the solid clipplane is done via
>> the text commands (see "mol clipplane color" commands).
>>
>> Cheers,
>> John Stone
>> vmd_at_ks.uiuc.edu
>>
>> On Tue, Feb 26, 2013 at 06:58:11PM +0000, Mayne, Christopher G wrote:
>> > It looks like:
>> > Extensions -> Visualization -> Clipping Plane Tool
>> > Chris
>> > On Feb 26, 2013, at 11:59 AM, Robert Johnson wrote:
>> >
>> > Hello Everyone,
>> > I was wondering how the purple image of the alpha-hemolysin
>> channel was
>> > made here: http://www.ks.uiuc.edu/Research/hemolysin/
>> > In particular, how was the cross-section made flat? Is this feature
>> > implemented in VMD or was this done after the image was rendered?
>> > Thanks,
>> > Bob
>> > --
>> > Bob Johnson, PhD
>> > Lab Coordinator & Lecturer
>> > Department of Physics and Astronomy
>> > University of Pennsylvania
>> > 209 S. 33rd St.
>> > Philadelphia, PA 19104
>> > Office: David Rittenhouse Laboratory 2C11
>> > Phone: 215-898-5111
>> > http://www.physics.upenn.edu/~robertjo
>>
>> --
>> NIH Center for Macromolecular Modeling and Bioinformatics
>> Beckman Institute for Advanced Science and Technology
>> University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
>> http://www.ks.uiuc.edu/~johns/ Phone: 217-244-3349
>> http://www.ks.uiuc.edu/Research/vmd/ Fax: 217-244-6078
>>
>
>
>
> --
> Bob Johnson, PhD
> Lab Coordinator & Lecturer
> Department of Physics and Astronomy
> University of Pennsylvania
> 209 S. 33rd St.
> Philadelphia, PA 19104
> Office: David Rittenhouse Laboratory 2C11
> Phone: 215-898-5111
> http://www.physics.upenn.edu/~robertjo
> 

-- 
Bob Johnson, PhD
Lab Coordinator & Lecturer
Department of Physics and Astronomy
University of Pennsylvania
209 S. 33rd St.
Philadelphia, PA 19104
Office: David Rittenhouse Laboratory 2C11
Phone: 215-898-5111
http://www.physics.upenn.edu/~robertjo