VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Mon May 14 2007 - 12:52:34 CDT

Luis,
  This is just the same psfgen issue you've seen before.
AutoIMD invokes psfgen for some of what it does, and this is
the reason you've experienced the same symptom. The 32-bit
build should work for you as before.

Cheers,
  John Stone
  vmd_at_ks.uiuc.edu

On Fri, May 11, 2007 at 07:48:16PM -0500, Luis Rosales wrote:
>
> Hi!!
>
> Just wondering if someone has experienced the same problem....
> I tred to run AutoIMD on the vmd 1.8.6 SGI IRIX for 64 bits, however each
> time I tried it, vmd crashed....
>
> >From the server I was able to get the following messages:
>
> May 11 17:00:02 6B:xitle Xsession: lrl: login
> May 11 17:06:31 1A:xitle unix: |$(0x6dd)ALERT: Process [vmd_IRIX6_64]
> 2457271 generated trap, but has signal 11 held or ignored
> May 11 17:06:31 1A:xitle unix: |$(0x6dd)ALERT: Process [vmd_IRIX6_64]
> 2457271 generated trap, but has signal 11 held or ignored [filter
> /usr/sbin/syseventFilter failed: exit status 0xff]
> May 11 17:06:31 6A:xitle unix: epc 0xd9fc8c8 ra 0xd9fc6ac badvaddr
> 0x21688198
> May 11 17:06:31 6A:xitle unix: process has been terminated to prevent
> infinite loop
> May 11 17:15:06 1A:xitle unix: |$(0x6dd)ALERT: Process [vmd_IRIX6_64]
> 2588358 generated trap, but has signal 11 held or ignored
> May 11 17:15:06 1A:xitle unix: |$(0x6dd)ALERT: Process [vmd_IRIX6_64]
> 2588358 generated trap, but has signal 11 held or ignored [filter
> /usr/sbin/syseventFilter failed: exit status 0xff]
>
> I have used the 1.8.5 version before, without problems. Also since I tried
> config files and structures that I have used in the past, I trust they are
> not the problem....
>
> Luis
>
> PS:
> A couple of years ago We had a very similar problem, and PSFgen for 64 bits
> was the one to blame. I just installed the 32 bits version and voila!!
> The problem is gone...
>
> Kind regards,
>
> Luis
>
>
>
> --
> ---------------------------------------------------
> Dr. Luis Rosales León
> Departamento de Visualización Científica
> Dirección General de Servicios de Cómputo Académico
> Universidad Nacional Autonoma de México
> AP 70228, Cd. Universitaria
> México, D.F. 04510
> Tel: 56228582
> Fax: 56228043
> ---------------------------------------------------
> 

-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
Email: johns_at_ks.uiuc.edu                 Phone: 217-244-3349
  WWW: http://www.ks.uiuc.edu/~johns/      Fax: 217-244-6078