VMD-L Mailing List

From: Moumita Maiti (m.moumita_at_gmail.com)
Date: Wed Jun 13 2007 - 04:05:25 CDT

Hi,

         I have deposited the output of fsfgen into the VMD biofs area and
name of file is psfgen_output.

Regards,
moumita

On 6/13/07, John Stone <johns_at_ks.uiuc.edu> wrote:
>
> Hi,
> Can you actually send the text of the error message you're
> getting from psfgen? I will have to check with the authors of
> psfgen etc to determine what's going on there. If you can provide
> us with a copy of the files and the error messages you're getting
> that would be very helpful. Don't mail the files to the VMD-L mailing
> list, either post them on the web or deposit them into the VMD
> biofs area on biocore, see:
> http://www.ks.uiuc.edu/Research/vmd/alpha/
>
> Cheers,
> John Stone
> vmd_at_ks.uiuc.edu
>
> On Mon, Jun 11, 2007 at 05:52:23AM +0000, Moumita Maiti wrote:
> > Hi,
> >
> > We had installed vmd source file in AMD opteron system and
> > pentium clusters. vmd works fine for pentium machine.
> >
> > But vmd can not load a molecule in AMD opteron system which has redhat
> > operating system(OS) if the cluster is logged in from mandrake operating
> > system. It works if we login from fedora/redhat OS.
> >
> > Running psfgen pgn file with vmd in AMD system gives CMAP error in any
> OS,
> > whereas same input pgn file and topology file does not give any CMAP
> error
> > in pentium cluster.
> >
> > What can be the possible problems?
> >
> > Regards,
> > moumita
>
> --
> NIH Resource for Macromolecular Modeling and Bioinformatics
> Beckman Institute for Advanced Science and Technology
> University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
> Email: johns_at_ks.uiuc.edu Phone: 217-244-3349
> WWW: http://www.ks.uiuc.edu/~johns/ Fax: 217-244-6078
>