VMD-L Mailing List

From: Axel Kohlmeyer (akohlmey_at_cmm.chem.upenn.edu)
Date: Sat Aug 11 2007 - 12:51:55 CDT

On 8/11/07, gurpreet singh <gps.iitm_at_gmail.com> wrote:
> Hello VMD users

hello gurpreet,

> I want to use STRIDE the helper program of vmd for predicting the
> secondary structure of my protein.
> I am using it for the first time so i need some documentation where i can
> read about the usage of stride.
> I searched in net but i did not find anything.

well, you should search a little bit harder. ;-)

for example look at the VMD documentation where it
has the copyright notices.
http://www.ks.uiuc.edu/Research/vmd/current/ug/node9.html#514
where you can find an URL to the stride webpage.

also, every time VMD calls stride, it prints out a banner page on the
console with the reference citation.

that should get you started.

cheers,
    axel.

> Any help in this regard will be highly appreciated.
> waiting for your reply
> Thanks
>
>
> Gurpreet
> IIT MADRAS
> INDIA
> 

-- 
=======================================================================
Axel Kohlmeyer   akohlmey_at_cmm.chem.upenn.edu   http://www.cmm.upenn.edu
  Center for Molecular Modeling   --   University of Pennsylvania
Department of Chemistry, 231 S.34th Street, Philadelphia, PA 19104-6323
tel: 1-215-898-1582,  fax: 1-215-573-6233,  office-tel: 1-215-898-5425
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If you make something idiot-proof, the universe creates a better idiot.