VMD-L Mailing List

From: João Ribeiro (jribeiro_at_ks.uiuc.edu)
Date: Mon Sep 18 2017 - 07:39:09 CDT

Dear Rahul,

make sure that the scripts in your .vmdrc are inside the "after idle"
command (e.g. after idle {scripts}) and the paths that you have defined in
your vmdrc file are valid.

I hope this helps

Best

João

On Mon, Sep 18, 2017 at 5:08 AM RAHUL SURESH <drrahulsuresh_at_gmail.com>
wrote:

> I have my VMD for CUDA downloaded and installed using he folowing commands
>
> ./configure
> cd src/
> sudo make install
>
>
>
>
> and on caling VMD i get the following message
>
>
> *viji_at_viji-X10SRA-F-Invalid-entry-length-16-Fixed-up-to-11:~/Downloads/VMD-CUDA/vmd-1.9.3/src$
> vmd*
> /usr/local/lib/vmd/vmd_LINUXAMD64: /usr/lib/nvidia-375/libGL.so.1: no
> version information available (required by
> /usr/local/lib/vmd/vmd_LINUXAMD64)
> Info) VMD for LINUXAMD64, version 1.9.3 (November 30, 2016)
> Info) http://www.ks.uiuc.edu/Research/vmd/
> Info) Email questions and bug reports to vmd_at_ks.uiuc.edu
> Info) Please include this reference in published work using VMD:
> Info) Humphrey, W., Dalke, A. and Schulten, K., `VMD - Visual
> Info) Molecular Dynamics', J. Molec. Graphics 1996, 14.1, 33-38.
> Info) -------------------------------------------------------------
> Info) Multithreading available, 16 CPUs detected.
> Info) CPU features: SSE2 AVX AVX2 FMA
> Info) Free system memory: 61GB (96%)
> Info) Creating CUDA device pool and initializing hardware...
> Info) Detected 1 available CUDA accelerator:
> Info) [0] Quadro K1200 4 SM_5.0 @ 1.03 GHz, 3.9GB RAM, KTO, AE1, ZCP
>
>
> *Warning) Detected X11 'Composite' extension: if incorrect display
> occursWarning) try disabling this X server option. Most OpenGL
> driversWarning) disable stereoscopic display when 'Composite' is enabled.*
> Info) OpenGL renderer: Quadro K1200/PCIe/SSE2
> Info) Features: STENCIL MSAA(4) MDE CVA MTX NPOT PP PS GLSL(OVFGS)
> Info) Full GLSL rendering mode is available.
> Info) Textures: 2-D (16384x16384), 3-D (4096x4096x4096), Multitexture (4)
> Info) Detected 1 available TachyonL/OptiX ray tracing accelerator
> Info) Compiling 1 OptiX shaders on 1 target GPU...
> Info) Dynamically loaded 2 plugins in directory:
> Info) /usr/local/lib/vmd/plugins/LINUXAMD64/molfile
>
>
>
>
>
> *couldn't load file
> "/home/viji/Downloads/vmd-1.9.3/plugins/LINUXAMD64/Routines/Other/sqlite/64B/libtclsqlite3.so":
> /home/viji/Downloads/vmd-1.9.3/plugins/LINUXAMD64/Routines/Other/sqlite/64B/libtclsqlite3.so:
> cannot open shared object file: No such file or
> directory/usr/local/lib/vmd/scripts/tcl8.5 /usr/local/lib/vmd/scripts
> /usr/local/lib/lib /Projects/johns/tcl/8.5.6/lib_LINUXAMD64/lib
> /usr/local/lib/vmd/scripts/tk8.5 /usr/local/lib/vmd/scripts/tk8.5/ttk
> /usr/local/lib/vmd/scripts/vmd /usr/local/lib/vmd/plugins/LINUXAMD64/tcl
> /usr/local/lib/vmd/plugins/noarch/tcl
> /home/viji/Downloads/vmd-1.9.3/plugins/LINUXAMD64//usr/local/lib/vmd/scripts/tcl8.5
> /usr/local/lib/vmd/scripts /usr/local/lib/lib
> /Projects/johns/tcl/8.5.6/lib_LINUXAMD64/lib
> /usr/local/lib/vmd/scripts/tk8.5 /usr/local/lib/vmd/scripts/tk8.5/ttk
> /usr/local/lib/vmd/scripts/vmd /usr/local/lib/vmd/plugins/LINUXAMD64/tcl
> /usr/local/lib/vmd/plugins/noarch/tcl
> /home/viji/Downloads/vmd-1.9.3/plugins/LINUXAMD64/
> /home/viji/Downloads/vmd-1.9.3/plugins/LINUXAMD64/Routines/Lib/usr/local/lib/vmd/scripts/tcl8.5
> /usr/local/lib/vmd/scripts /usr/local/lib/lib
> /Projects/johns/tcl/8.5.6/lib_LINUXAMD64/lib
> /usr/local/lib/vmd/scripts/tk8.5 /usr/local/lib/vmd/scripts/tk8.5/ttk
> /usr/local/lib/vmd/scripts/vmd /usr/local/lib/vmd/plugins/LINUXAMD64/tcl
> /usr/local/lib/vmd/plugins/noarch/tcl
> /home/viji/Downloads/vmd-1.9.3/plugins/LINUXAMD64/
> /home/viji/Downloads/vmd-1.9.3/plugins/LINUXAMD64/Routines/Lib
> /home/viji/Downloads/vmd-1.9.3/plugins/LINUXAMD64/Routines/Other/usr/local/lib/vmd/scripts/tcl8.5
> /usr/local/lib/vmd/scripts /usr/local/lib/lib
> /Projects/johns/tcl/8.5.6/lib_LINUXAMD64/lib
> /usr/local/lib/vmd/scripts/tk8.5 /usr/local/lib/vmd/scripts/tk8.5/ttk
> /usr/local/lib/vmd/scripts/vmd /usr/local/lib/vmd/plugins/LINUXAMD64/tcl
> /usr/local/lib/vmd/plugins/noarch/tcl
> /home/viji/Downloads/vmd-1.9.3/plugins/LINUXAMD64/
> /home/viji/Downloads/vmd-1.9.3/plugins/LINUXAMD64/Routines/Lib
> /home/viji/Downloads/vmd-1.9.3/plugins/LINUXAMD64/Routines/Other
> /home/viji/Downloads/vmd-1.9.3/plugins/LINUXAMD64/Routines/Other/graphThe
> VolArea package could not be loaded:*
>
> vmd >
>
>
>
>
> What does the above thing suggests?
>
> Any post regarding this would be really hellpful
> --
> *Regards,*
> *Rahul Suresh*
> *Research Scholar*
> *Bharathiar University*
> *Coimbatore*
> 

-- 
……………………………………………………...
João Vieira Ribeiro
Theoretical and Computational Biophysics Group
Beckman Institute, University of Illinois
jribeiro_at_ks.uiuc.edu
+1 (217) 3005851