VMD-L Mailing List

From: Peter Freddolino (petefred_at_ks.uiuc.edu)
Date: Tue Jul 03 2007 - 16:46:26 CDT

Hi Thanassis,
Please have a look at the patches included in your charmm topology file;
you will want to use ACE and CT2.
Best,
Peter

Αθανάσιος Σταυρακούδης wrote:
> Dear NAMD/VMD users,
>
> I read several messages in this list about how to model ACE and NH2
> with NAMD/VMD. But simply got no answer.
>
> Is there (finally) a solution to this problem?
> So, can NAMD handle capped peptides?
>
> Thank you,
> Thanassis Stavrakoudis
>