VMD-L Mailing List

From: Jan Brezovsky (briza_at_chemi.muni.cz)
Date: Wed Nov 21 2012 - 05:52:37 CST

Hello all,

just to add one more alternative program (Caver 3.0) which was designed
for analysis of MD trajectories.
http://caver.cz/

Have a nice day,
Jan 

-- 
***************************************
  Jan Brezovsky, Ph.D.
  Loschmidt Laboratories
  Department of Experimental Biology
  Faculty of Science, Masaryk University
  Kamenice 5/A13-2.19
  625 00 Brno
  Czech Republic
***************************************
  tel. +420-54949-2616
  briza_at_chemi.muni.cz
  http://loschmidt.chemi.muni.cz/peg
***************************************
On 11/21/2012 11:19 AM, Ban Arn wrote:
> Hi all
>
> Thanks for the reply.
>
> John, I contacted Oliver through the above mail id, but didnt get any 
> reply from him.
>
> And Brain thanks for the alternative program, however the program 
> works for single pdb structure.
>
> I'm want to calculate the same for simulation trajectories.
>
> Kindly advice.
>
> Many Thanks
> Balaji
>
>
> On Tue, Nov 20, 2012 at 6:14 PM, Bennion, Brian <Bennion1_at_llnl.gov 
> <mailto:Bennion1_at_llnl.gov>> wrote:
>
>     this program might work for your needs
>     http://mole.upol.cz/
>
>
>     ________________________________________
>     From: owner-vmd-l_at_ks.uiuc.edu <mailto:owner-vmd-l_at_ks.uiuc.edu>
>     [owner-vmd-l_at_ks.uiuc.edu <mailto:owner-vmd-l_at_ks.uiuc.edu>] on
>     behalf of John Stone [johns_at_ks.uiuc.edu <mailto:johns_at_ks.uiuc.edu>]
>     Sent: Tuesday, November 20, 2012 8:54 AM
>     To: Ban Arn
>     Cc: vmd-l_at_ks.uiuc.edu <mailto:vmd-l_at_ks.uiuc.edu>
>     Subject: Re: vmd-l: Hole program for vmd hole tcl script
>
>     Hi,
>       I recommend contacting Olver Smart, the author of HOLE
>     and ask him where to download it.  The link on his page doesn't
>     work currently:
>     http://www.globalphasing.com/people/osmart/
>
>     Cheers,
>       John Stone
>     vmd_at_ks.uiuc.edu <mailto:vmd_at_ks.uiuc.edu>
>
>     On Tue, Nov 20, 2012 at 02:59:20PM +0000, Ban Arn wrote:
>     >    Dear VMD users
>     >    I am looking for download link for HOLE program.
>     >    I came across the following thread in vmd
>     >  
>      (http://www.ks.uiuc.edu/Research/vmd/mailing_list/vmd-l/3461.html)
>     >    Can anyone help me in this regard.
>     >    Sorry for posting other threads that are not related to vmd.
>     >    Many Thanks
>     >    Balaji
>
>     --
>     NIH Resource for Macromolecular Modeling and Bioinformatics
>     Beckman Institute for Advanced Science and Technology
>     University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
>     http://www.ks.uiuc.edu/~johns/ <http://www.ks.uiuc.edu/%7Ejohns/>
>           Phone: 217-244-3349 <tel:217-244-3349>
>     http://www.ks.uiuc.edu/Research/vmd/       Fax: 217-244-6078
>     <tel:217-244-6078>
>
>