VMD-L Mailing List

From: Axel Kohlmeyer (akohlmey_at_gmail.com)
Date: Fri Mar 01 2013 - 09:39:35 CST

On Fri, Mar 1, 2013 at 10:05 AM, Bharath K. Srikanth
<s.bharath_at_iitg.ernet.in> wrote:
> Hi all,
>
> I'm trying to calculate the radial pair distribution function of a protein
> with respect to a lipid bilayer. Could you please inform me whether the
> values on the x-axis (of the graph obtained from the vmd script gofr) are
> absolute distance (in nm), or some other form of normalized distance? If

they are in the same distance units than what VMD holds internally.
usually angstroms.

axel.

> it is absolute distance, I need to try again, because my graph's values
> are incorrect.
>
> Sincerely
>
> --
> Bharath K Srikanth
> IV Year B.Tech
> Dept. of Chemical Engineering
> Indian Institute of Technology, Guwahati
> Ph: (+91) 88762 03224
> E.mail: s.bharath_at_iitg.ernet.in 

-- 
Dr. Axel Kohlmeyer  akohlmey_at_gmail.com  http://goo.gl/1wk0
International Centre for Theoretical Physics, Trieste. Italy.