VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Wed Jan 13 2016 - 12:05:37 CST

Hi,
  With a little bit of scripting, it is certainly possible to
load arbitrary 1-D or 2-D data and associate it with MD trajectory
frames and have the two linked in various ways. Do you have a
particular example of the sort of information that you're interested
in loading and interacting with?

Cheers,
  John Stone
  vmd_at_ks.uiuc.edu

On Fri, Jan 08, 2016 at 07:55:49PM +0100, Matthias Ernst wrote:
> Hi,
>
> first of all, thanks for the nice software VMD which I really enjoy
> working with!
>
> I have a question. When I load an MD trajectory of a protein and
> calculate the Ramachandran plot, I can scroll through the trajectory and
> the current value in x/y is automatically shown in the plot. On the
> other hand, if I click on a point, the corresponding frame is chosen.
>
> Is it also possible to load external data (in 1D or 2D) and show it in
> the same way (highlighted when scrolling, possibly even going to the
> timeframe when selecting)?
>
> Thank you very much,
> Matthias Ernst
>
> --
> Progress... http://www.phdcomics.com/comics/archive.php?comicid=1611 

-- 
NIH Center for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
http://www.ks.uiuc.edu/~johns/           Phone: 217-244-3349
http://www.ks.uiuc.edu/Research/vmd/