VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Thu Jul 07 2011 - 13:01:56 CDT

Hi,
  There isn't currently an automatic graphical representation for this,
but you should be able to write a script that does this for you
fairly automatically.

Cheers,
  John Stone
  vmd_at_ks.uiuc.edu

On Thu, Jul 07, 2011 at 08:06:51AM +0200, Christian Wohlschlager wrote:
> Hello all of you !
>
> I 'm working with saltbridges on a molekul as i saw i can get with the
> saltbrige plugin the text form, but is there also a script that shows me
> the briges in visual form.
>
> i want to now exactly the position of the saltbrige.Of course i can make a
> represantation :
>
> resname GLY and residue 120
>
> resname PRO and residue 79
>
> (this is just an example)
>
> for each saltbrige on the molekul but this would be a lot of work. I just
> want to know if there i a easier way of doing this
>
> thanks a lot
>
> christian
>
>
>
> Christian Wohlschlager
> JKU Universita:t Linz
> Altenbergerstr.69
> 4040 Linz
> Austria 

-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
http://www.ks.uiuc.edu/~johns/           Phone: 217-244-3349
http://www.ks.uiuc.edu/Research/vmd/       Fax: 217-244-6078