VMD-L Mailing List
From: Axel Kohlmeyer (akohlmey_at_gmail.com)
Date: Tue Sep 13 2011 - 23:54:39 CDT
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On Tue, Sep 13, 2011 at 11:23 PM, meisam valizadeh kiamahalleh
<meisam488_at_gmail.com> wrote:
> Dear VMD users
> I have run MD on carbon nanotube with solvated drug molecules inside and
> outside the tubes. Kindly would you please let me know how I
> can visualize and calculate the amount of molecules only inside the carbon
> nanotube during MD process. May I know what keywords I should use in graph
> presentation?
there is no single command that will do all you want
in a magic way. programs like VMD are no mindreaders.
all the do is provide a toolkit that _you_ will have to
utilize by determining how you translate "in the nanotube"
into terms that can be expressed by the available tools.
have a closer look at the VMD users guide and the tutorials.
there are many examples.
axel.
> Thank you very much
> Kind regards
> Meisam
>
>
>
>
-- Dr. Axel Kohlmeyer akohlmey_at_gmail.com http://goo.gl/1wk0 Institute for Computational Molecular Science Temple University, Philadelphia PA, USA.
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