VMD-L Mailing List
From: John Stone (johns_at_ks.uiuc.edu)
Date: Thu Nov 30 2000 - 14:51:44 CST
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Dear VMD-L,
We have begun to collect together many of the smaller scale
programs and scripts written in our research group that others
in the field would find useful. We are calling this collection
"MDTools", and have created a web page (if you haven't already
seen it) for these tools:
http://www.ks.uiuc.edu/Development/MDTools/
Here's a brief list of the MDTools we've recently made available:
Chemical2vmd Lets VMD act as a helper application for
chemical/x-vmd MIME type
Conect2psf Converts PDB CONECT records into a PSF file for
proper bond display in VMD
FlipDCD/FixDCD DCD file endianism and header conversion
MDTools for Python Protein structure and dynamics analysis classes
MatDCD Matlab package for DCD reading/writing
Mindy A "minimal" molecular dynamics program
PDBCat Helpful tool for PDB text processing
SODIUM Arrange ions around biological macromolecules
Trio MD Trajectory file converter
Usagemon Software usage/event tracking system
We hope that the community will find these tools useful in addition
to our larger development projects BioCoRE, NAMD, and VMD.
If you have any comments, questions, or suggestions for the MDTools page
please send email to me and I'll address them.
Thanks,
John Stone
vmd_at_ks.uiuc.edu
-- NIH Resource for Macromolecular Modeling and Bioinformatics Beckman Institute for Advanced Science and Technology University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801 Email: johns_at_ks.uiuc.edu Phone: 217-244-3349 WWW: http://www.ks.uiuc.edu/~johns/ Fax: 217-244-6078
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