VMD-L Mailing List

From: Axel Kohlmeyer (akohlmey_at_gmail.com)
Date: Wed Oct 14 2015 - 20:53:12 CDT

or you can just delete the low-level graphics commands from the saved state
file. that may be even more convenient.

On Wed, Oct 14, 2015 at 9:52 PM, Axel Kohlmeyer <akohlmey_at_gmail.com> wrote:

>
>
> On Wed, Oct 14, 2015 at 9:44 PM, M K <mahyar.karimi20_at_gmail.com> wrote:
>
>> Thank you so much. I tried it:
>> It works when I load a normal trajectory file and add the box. However,
>> it does not work when the trajectory has been loaded by "Load Visualization
>> State" ...
>>
>
> ​yes, because pbctools can only delete (specific) graphics elements, when
> it had written them itself (and thus kept track of them).
> when you load the visualization state, it is some low-level code in VMD
> that restores the graphics elements, so you also have to use a low-level
> graphics script command to delete those graphics elements. there is a
> "graphics <molid> delete ​all option that allows to do this for
> "everything".
>
> for details, please see the VMD users guide:
> http://www.ks.uiuc.edu/Research/vmd/vmd-1.9.2/ug/node129.html
>
> axel.
>
>
>
>
>>
>> On Fri, Sep 18, 2015 at 1:46 PM, Axel Kohlmeyer <akohlmey_at_gmail.com>
>> wrote:
>>
>>>
>>>
>>> On Thu, Sep 17, 2015 at 11:22 PM, M K <mahyar.karimi20_at_gmail.com> wrote:
>>>
>>>> Hi,
>>>>
>>>> I have drawn the box using pbc tool:
>>>>
>>>> pbc box -color white
>>>>
>>>> But I need to remove it now. Is there any command to delete it? Or I
>>>> should load the whole trajectories from the beginning?
>>>>
>>>
>>> http://www.ks.uiuc.edu/Research/vmd/plugins/pbctools/
>>>
>>> ​how about: pbc box -off​
>>>
>>> ​axel.​
>>>
>>>>
>>>> Thank you.
>>>>
>>>
>>>
>>>
>>> --
>>> Dr. Axel Kohlmeyer akohlmey_at_gmail.com http://goo.gl/1wk0
>>> College of Science & Technology, Temple University, Philadelphia PA, USA
>>> International Centre for Theoretical Physics, Trieste. Italy.
>>>
>>
>>
>
>
> --
> Dr. Axel Kohlmeyer akohlmey_at_gmail.com http://goo.gl/1wk0
> College of Science & Technology, Temple University, Philadelphia PA, USA
> International Centre for Theoretical Physics, Trieste. Italy.
> 

-- 
Dr. Axel Kohlmeyer  akohlmey_at_gmail.com  http://goo.gl/1wk0
College of Science & Technology, Temple University, Philadelphia PA, USA
International Centre for Theoretical Physics, Trieste. Italy.