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From: Leonardo Trabuco (ltrabuco_at_ks.uiuc.edu)
Date: Tue Jul 27 2010 - 11:07:03 CDT

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Dear Balaji,

On Tue, Jul 27, 2010 at 5:55 PM, ban arn <ban.arn_at_gmail.com> wrote:
>
> Dear All
>
> I would like to plot 2D rmsd matrix for backbone & C-alpha atoms for my trajectories.
>
> I'm using rmsd_matrix.tcl for the same.
>
> The script works fine for the backbone.
>
> For c-alpha atoms, in the command line while i'm selecting "name CA" its shows error as "unknow argument".
>
> This is the command i have used for c-alpha atoms "rmsd_matrix -mol top -seltext name CA -frames all -fit none -o output.txt"

Try:
rmsd_matrix -mol top -seltext "name CA" -frames all -fit none -o output.txt

Cheers,
Leo

> Kindly advice.
>
> Many Thanks
> Balaji

--
Leonardo Trabuco, Ph.D.
CellNetworks, BioQuant
University of Heidelberg, Germany

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