From: Brian Bennion (brian_at_youkai.llnl.gov)
Date: Tue Dec 14 2004 - 12:47:07 CST

Hi Eunice,

It sounds like you are regenerating the water boxes and not loading the
originals. Can you send a copy of your pgn file?

Brian

On Tue, 14 Dec 2004, Eunice Ramirez Melendez wrote:

> Hi all
>
> I am trying to ccreate a system in which I load a bilayer (128 lipids) and two water boxes together. The water boxes
> have the same XY dimenssions as the bilayer. However. each time I run my pgn file, the resulting pdb file showed that
> the water boxes are incomplete. For example, if my system vectors were 60 x 60, the water boxes dimensions after the
> pgn are 40 x 40. But the bilayer is still 60 x 60.
> If someone have any idea of what is happening here PLEASE HELP!!!
>
> Thanks,
> Eunice
>
> -------------------------------------------------------------
> Antes ahora y siempre COLEGIO
> University of Puerto Rico at Mayaguez
> http://www.uprm.edu
> -------------------------------------------------------------
>
>
>

*****************************************************************
**Brian Bennion, Ph.D. **
**Computational and Systems Biology Division **
**Biology and Biotechnology Research Program **
**Lawrence Livermore National Laboratory **
**P.O. Box 808, L-448 bennion1_at_llnl.gov **
**7000 East Avenue phone: (925) 422-5722 **
**Livermore, CA 94550 fax: (925) 424-6605 **
*****************************************************************