VMD-L Mailing List

From: Giacomo Fiorin (giacomo.fiorin_at_gmail.com)
Date: Wed Sep 13 2017 - 14:04:46 CDT

I would look into using the withinbonds keyword that Josh mentioned a few
days ago.

On Wed, Sep 13, 2017 at 1:39 PM, Karteek Kumar <karthik3327_at_gmail.com>
wrote:

> Hi,
>
> Use a different name for polar hydrogen you want. Make a representation
> for those atoms (something like "name Hp")
>
> Hope this helps.
>
> Karteek
>
> On Wed, Sep 13, 2017 at 1:07 PM, Albers, Thomas <TALBERS_at_augusta.edu>
> wrote:
>
>> Hello!
>>
>>
>> Is there any keyword in VMD that selects polar hydrogens (i.e. those
>> bound to N, O and possibly S)?
>>
>>
>> Regards,
>>
>> Thomas
>>
>>
>>
>>
> 

-- 
Giacomo Fiorin
Associate Professor of Research, Temple University, Philadelphia, PA
Contractor, National Institutes of Health, Bethesda, MD
http://goo.gl/Q3TBQU
https://github.com/giacomofiorin