VMD-L Mailing List

From: Axel Kohlmeyer (akohlmey_at_gmail.com)
Date: Wed Sep 21 2016 - 08:10:58 CDT

On Wed, Sep 21, 2016 at 8:42 AM, Vlad Cojocaru
<vlad.cojocaru_at_mpi-muenster.mpg.de> wrote:
> Dear all,
>
> I am trying to compile VMD (CVS today) on a LINUXAMD64 arch with openSUSE
> 42.1 (gcc 4.8.5), cuda 7.5.18 but I get the following error:
>
>
> /usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../x86_64-suse-linux/bin/ld:
> /apps/nvidia/cuda/7.5.18/lib64/libcudart_static.a(libcudart_static.a.o):
> undefined reference to symbol 'shm_unlink@@GLIBC_2.2.5'
> /lib64/librt.so.1: error adding symbols: DSO missing from command line
> collect2: error: ld returned 1 exit status
> Makefile:608: recipe for target 'vmd_LINUXAMD64' failed
> make: *** [vmd_LINUXAMD64] Error 1
>
>
> Did anybody experience this and knows a way to resolve the issue?

this most likely means, that you either didn't link with -lrt
correctly or that your glibc version is too old compared with the one
used to compile the CUDA toolkit.

axel.

>
> Thanks a lot
>
> Best wishes
> Vlad
>
> --
> Dr. Vlad Cojocaru
> Computational Structural Biology Laboratory
> Department of Cell and Developmental Biology
> Max Planck Institute for Molecular Biomedicine
> Röntgenstrasse 20, 48149 Münster, Germany
> Tel: +49-251-70365-324; Fax: +49-251-70365-399
> Email: vlad.cojocaru[at]mpi-muenster.mpg.de
> http://www.mpi-muenster.mpg.de/43241/cojocaru
> 

-- 
Dr. Axel Kohlmeyer  akohlmey_at_gmail.com  http://goo.gl/1wk0
College of Science & Technology, Temple University, Philadelphia PA, USA
International Centre for Theoretical Physics, Trieste. Italy.