VMD-L Mailing List

From: alberto (voodoo.bender_at_gmail.com)
Date: Tue Feb 05 2019 - 12:04:43 CST

Hi,
I found your script in vmd mailing list
I would a script to monitoring distance between atoms of silicon of slab
and other atom for all frame.

I would obtain for every frame the minimal distance between silicon atom
and nitrogen atom

for single couple I use

set bl [measure bond {IDA IDB} frame all]

regards

Alberto

 silica2_dipodal_monodactyl_MeO_Me_pyridine_298K...
<https://drive.google.com/file/d/1rTUz0YcLPLOBucAb5fgTXcKNh0WKVgZB/view?usp=drive_web>