From: Cetin Baloglu (baloglu_at_gmail.com)
Date: Wed May 18 2005 - 03:44:34 CDT

Hi,

I use periodic boundary conditions in my simulations and during the
simulations, the side chains are moving out of the box as expected.
However I want to make sure when a big conformational change occurs
the water interacts with residues that are buried previously. Is
there a trick to see residues moving out of the box, with the expected
water.

Cetin Baloglu