From: Suresh (suresh.gorle_at_research.iiit.ac.in)
Date: Thu Oct 04 2012 - 22:53:22 CDT

Hi,

In the VMD 1.9.1 version there is an option in Extensions => analysis => RMSD visualizer tool, from there you can get heatmap directly.

For more information see this page:
http://www.ks.uiuc.edu/Research/vmd/plugins/heatmapper/

hope this helps

----- Original Message -----
From: "Esam Tolba" <eatolba_at_gmail.com>
To: vmd-l_at_ks.uiuc.edu
Sent: Friday, October 5, 2012 3:12:25 AM
Subject: vmd-l: Heat mapper

Dear VMD team
I am using VMD under windows. I am interested in using the heatmapper plugin. The problem that I didn't find tutorial for that.
So I have some questions:
1- what is the format of the input file?
2- How the input file for the heat mapper should written?
3- How to load the data file (input file) to draw a heat map
thanks
Best Regards,
Esam