VMD-L Mailing List
From: Shirley Li (li19104_at_yahoo.com)
Date: Mon Aug 16 2004 - 19:35:29 CDT
- Next message: Shirley Li: "Re: get average coord. from .pdb file?"
- Previous message: John Stone: "Re: get average coord. from .pdb file?"
- In reply to: John Stone: "Re: Calculate accessible surface area"
- Next in thread: John Stone: "Re: Calculate accessible surface area"
- Reply: John Stone: "Re: Calculate accessible surface area"
- Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]
Hi John,
Thank you very much for your response to my question.
I would be please to use this test version. It would be appreciated if you could provide me with a copy.
Thank you again for your kind help.
Regards,
Shirley
John Stone <johns_at_ks.uiuc.edu> wrote:
Hi Shirley,
The existing released versions of VMD don't provide a built-in feature
for calculating solvent accessible surface area, but VMD 1.8.3 includes
a new "measure sasa" command for this purpose. If you want a test version
to try, I can provide one for you which has this feature.
John Stone
vmd_at_ks.uiuc.edu
On Fri, Aug 13, 2004 at 03:14:33PM -0700, Shirley Li wrote:
> Hello,
>
> Could anyone tell me how to calculate the ACCESSIBLE SURFACE AREA of a protein with VMD?
>
> Thank you and sorry for bothering all.
>
> Best regards,
>
> Shirley
>
>
> ---------------------------------
> Do you Yahoo!?
> Y! Messenger - Communicate in real time. Download now.
-- NIH Resource for Macromolecular Modeling and Bioinformatics Beckman Institute for Advanced Science and Technology University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801 Email: johns_at_ks.uiuc.edu Phone: 217-244-3349 WWW: http://www.ks.uiuc.edu/~johns/ Fax: 217-244-6078 --------------------------------- Do you Yahoo!? Yahoo! Mail is new and improved - Check it out!
- Next message: Shirley Li: "Re: get average coord. from .pdb file?"
- Previous message: John Stone: "Re: get average coord. from .pdb file?"
- In reply to: John Stone: "Re: Calculate accessible surface area"
- Next in thread: John Stone: "Re: Calculate accessible surface area"
- Reply: John Stone: "Re: Calculate accessible surface area"
- Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]