VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Fri Jun 24 2005 - 18:24:55 CDT

Ioana,
  I have something new to try out in my next test build, and with any
luck you'll be able to run the resulting binary with much less hassle.
I'll send an email to VMD-L when the next test binary is prepared and
ready for testing.

  John Stone
  vmd_at_ks.uiuc.edu

On Thu, Jun 23, 2005 at 03:12:47PM -0700, Ioana Cozmuta wrote:
> Hi,
> Thanks for the suggestions. I did build the symbolik links and was able to
> bring up the VMD windows. However there's a loooong list of missing
> links/libraries that I don't know how to fix.
> Attached is the output. I would appreciate any suggestions.
> I'm unclear at this point as to whether there is a new built by John
> following this posting or not? The order of the e-mails on the VMD list is
> different than the order of the e-mails I have in my inbox. So if there is
> an update of the version I am trying to build could you please specify that?
> Thank you,
> Ioana
> On 6/22/05, John Stone <johns_at_ks.uiuc.edu> wrote:
> >
> >
> > Ioana,
> > Thanks for the info. Here's Oliver's output for comparison:
> >
> > Oliver's Prism:
> > Linux prism2 2.4.21-sgi305rp05060914_10173 #1 SMP Thu Jun 9 14:16:44 PDT
> > 2005 ia64 ia64 ia64 GNU/Linux
> >
> > Ioana's Altix/Prism:
> > Linux 2.4.21-sgi302c21 #1 SMP Sat Sep 25 23:00:18 PDT 2004 ia64 ia64 ia64
> > GNU/Linux
> >
> > Judging by the kernel versions and dates, it would appear that Oliver's
> > machine has a much more recently built kernel, perhaps the issue here
> > is that Ioana's machine has a much older Linux install on it. Ioana,
> > can you ask your systems people what version of the system software you're
> > running and how old it is? Oliver, yours looks like its very recent, but
> > it might also be informative to collect the same information so we can
> > figure out how SGI's Linux relates to what other distributions are
> > shipping.
> > Ioana, is your machine an Altix, or is it a Prism? I assume that the
> > Linux distribution that shipped with the early Altix machines didn't
> > contain as complete of a distribution as far as OpenGL etc went, so
> > if yours is an Altix and you guys have had it for a while that may explain
> > why you're missing some libraries that Oliver obviously has.
> >
> > John Stone
> > vmd_at_ks.uiuc.edu
> >
> >
> > > Ioana
> > >
> > > On 6/21/05, John Stone <johns_at_ks.uiuc.edu> wrote:
> > > >
> > > >
> > > > Ioana,
> > > > Can you send me the output of 'uname -a' on your machine?
> > > >
> > > > John Stone
> > > > vmd_at_ks.uiuc.edu
> > > >
> > > > On Tue, Jun 21, 2005 at 03:47:24PM -0700, Ioana Cozmuta wrote:
> > > > > Hi John,
> > > > > I'm confused, is this for an Linux/Altix with Itanium 64 processors?
> > > > > I've tried to install it on the SGI/Linux-IA64 and it would give an
> > > > error
> > > > > related to libraries
> > > > > $install_directory/lib/vmd/vmd_LINUXIA64: error while loading shared
> > > > > libraries: libcprts.so.6: cannot open shared object file: No such
> > file
> > > > or
> > > > > directory
> > > > > Is there a way to solve this problem?
> > > > > ioana
> > > > >
> > > > > On 6/21/05, John Stone <johns_at_ks.uiuc.edu> wrote:
> > > > > >
> > > > > >
> > > > > > Hi,
> > > > > > I've posted both 32-bit and 64-bit test builds of VMD 1.8.4
> > > > > > for AIX5 on the web site:
> > > > > > http://www.ks.uiuc.edu/Research/vmd/alpha/
> > > > > >
> > > > > > John Stone
> > > > > > vmd_at_ks.uiuc.edu
> > > > > >
> > > > > > --
> > > > > > NIH Resource for Macromolecular Modeling and Bioinformatics
> > > > > > Beckman Institute for Advanced Science and Technology
> > > > > > University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
> > > > > > Email: johns_at_ks.uiuc.edu Phone: 217-244-3349
> > > > > > WWW: http://www.ks.uiuc.edu/~johns/ Fax: 217-244-6078
> > > > > >
> > > > >
> > > > >
> > > > >
> > > > > --
> > > > > Ioana Cozmuta, Ph.D.
> > > > > Eloret Corporation
> > > > > NASA Ames Research Center
> > > > > http://people.nas.nasa.gov/~ioana/
> > > > > w (650) 604-0993, h (408) 732-1399
> > > >
> > > > --
> > > > NIH Resource for Macromolecular Modeling and Bioinformatics
> > > > Beckman Institute for Advanced Science and Technology
> > > > University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
> > > > Email: johns_at_ks.uiuc.edu Phone: 217-244-3349
> > > > WWW: http://www.ks.uiuc.edu/~johns/ Fax: 217-244-6078
> > > >
> > >
> > >
> > >
> > > --
> > > Ioana Cozmuta, Ph.D.
> > > Eloret Corporation
> > > NASA Ames Research Center
> > > http://people.nas.nasa.gov/~ioana/
> > > w (650) 604-0993, h (408) 732-1399
> >
> > --
> > NIH Resource for Macromolecular Modeling and Bioinformatics
> > Beckman Institute for Advanced Science and Technology
> > University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
> > Email: johns_at_ks.uiuc.edu Phone: 217-244-3349
> > WWW: http://www.ks.uiuc.edu/~johns/ Fax: 217-244-6078
> >
>
>
>
> --
> Ioana Cozmuta, Ph.D.
> Eloret Corporation
> NASA Ames Research Center
> http://people.nas.nasa.gov/~ioana/
> w (650) 604-0993, h (408) 732-1399

> Info) http://www.ks.uiuc.edu/Research/vmd/
> Info) Email questions and bug reports to vmd_at_ks.uiuc.edu
> Info) Please include this reference in published work using VMD:
> Info) Humphrey, W., Dalke, A. and Schulten, K., `VMD - Visual
> Info) Molecular Dynamics', J. Molec. Graphics 1996, 14.1, 33-38.
> Info) -------------------------------------------------------------
> Info) Multithreading available, 1 CPU detected.
> Xlib: extension "XFree86-DRI" missing on display "localhost:16.0".
> Info) OpenGL renderer: IMPACT/1/1/0
> Info) Features: STENCIL RN
> Info) GLSL rendering mode is NOT available.
> Info) Textures: 2-D (1024x1024)
> Unable to open dynamic library '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINU
> XIA64/molfile/avsplugin.so'
> libimf.so.6: cannot open shared object file: No such file or directory
> Unable to dlopen '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA64/molfile/
> avsplugin.so':
> Unable to dlopen plugin file /u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA
> 64/molfile/avsplugin.so
> Unable to open dynamic library '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINU
> XIA64/molfile/babelplugin.so'
> libimf.so.6: cannot open shared object file: No such file or directory
> Unable to dlopen '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA64/molfile/
> babelplugin.so':
> Unable to dlopen plugin file /u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA
> 64/molfile/babelplugin.so
> Unable to open dynamic library '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINU
> XIA64/molfile/binposplugin.so'
> libimf.so.6: cannot open shared object file: No such file or directory
> Unable to dlopen '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA64/molfile/
> binposplugin.so':
> Unable to dlopen plugin file /u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA
> 64/molfile/binposplugin.so
> Unable to open dynamic library '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINU
> XIA64/molfile/brixplugin.so'
> libimf.so.6: cannot open shared object file: No such file or directory
> Unable to dlopen '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA64/molfile/
> brixplugin.so':
> Unable to dlopen plugin file /u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA
> 64/molfile/brixplugin.so
> Unable to open dynamic library '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINU
> XIA64/molfile/carplugin.so'
> libimf.so.6: cannot open shared object file: No such file or directory
> Unable to dlopen '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA64/molfile/
> carplugin.so':
> Unable to dlopen plugin file /u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA
> 64/molfile/carplugin.so
> Unable to open dynamic library '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINU
> XIA64/molfile/ccp4plugin.so'
> libimf.so.6: cannot open shared object file: No such file or directory
> Unable to dlopen '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA64/molfile/
> ccp4plugin.so':
> Unable to dlopen plugin file /u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA
> 64/molfile/ccp4plugin.so
> Unable to open dynamic library '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINU
> XIA64/molfile/corplugin.so'
> libimf.so.6: cannot open shared object file: No such file or directory
> Unable to dlopen '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA64/molfile/
> corplugin.so':
> Unable to dlopen plugin file /u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA
> 64/molfile/corplugin.so
> Unable to open dynamic library '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINU
> XIA64/molfile/cpmdplugin.so'
> libimf.so.6: cannot open shared object file: No such file or directory
> Unable to dlopen '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA64/molfile/
> cpmdplugin.so':
> Unable to dlopen plugin file /u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA
> 64/molfile/cpmdplugin.so
> Unable to open dynamic library '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINU
> XIA64/molfile/crdplugin.so'
> libimf.so.6: cannot open shared object file: No such file or directory
> Unable to dlopen '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA64/molfile/
> crdplugin.so':
> Unable to dlopen plugin file /u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA
> 64/molfile/crdplugin.so
> Unable to open dynamic library '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINU
> XIA64/molfile/cubeplugin.so'
> libimf.so.6: cannot open shared object file: No such file or directory
> Unable to dlopen '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA64/molfile/
> cubeplugin.so':
> Unable to dlopen plugin file /u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA
> 64/molfile/cubeplugin.so
> Unable to open dynamic library '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINU
> XIA64/molfile/dcdplugin.so'
> libimf.so.6: cannot open shared object file: No such file or directory
> Unable to dlopen '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA64/molfile/
> dcdplugin.so':
> Unable to dlopen plugin file /u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA
> 64/molfile/dcdplugin.so
> Unable to open dynamic library '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINU
> XIA64/molfile/dlpolyplugin.so'
> libimf.so.6: cannot open shared object file: No such file or directory
> Unable to dlopen '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA64/molfile/
> dlpolyplugin.so':
> Unable to dlopen plugin file /u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA
> 64/molfile/dlpolyplugin.so
> Unable to open dynamic library '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINU
> XIA64/molfile/dsn6plugin.so'
> libimf.so.6: cannot open shared object file: No such file or directory
> Unable to dlopen '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA64/molfile/
> dsn6plugin.so':
> Unable to dlopen plugin file /u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA
> 64/molfile/dsn6plugin.so
> Unable to open dynamic library '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINU
> XIA64/molfile/dxplugin.so'
> libimf.so.6: cannot open shared object file: No such file or directory
> Unable to dlopen '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA64/molfile/
> dxplugin.so':
> Unable to dlopen plugin file /u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA
> 64/molfile/dxplugin.so
> Unable to open dynamic library '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINU
> XIA64/molfile/edmplugin.so'
> libimf.so.6: cannot open shared object file: No such file or directory
> Unable to dlopen '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA64/molfile/
> edmplugin.so':
> Unable to dlopen plugin file /u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA
> 64/molfile/edmplugin.so
> Unable to open dynamic library '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINU
> XIA64/molfile/fs4plugin.so'
> libimf.so.6: cannot open shared object file: No such file or directory
> Unable to dlopen '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA64/molfile/
> fs4plugin.so':
> Unable to dlopen plugin file /u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA
> 64/molfile/fs4plugin.so
> Unable to open dynamic library '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINU
> XIA64/molfile/gamessplugin.so'
> libimf.so.6: cannot open shared object file: No such file or directory
> Unable to dlopen '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA64/molfile/
> gamessplugin.so':
> Unable to dlopen plugin file /u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA
> 64/molfile/gamessplugin.so
> Unable to open dynamic library '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINU
> XIA64/molfile/graspplugin.so'
> libimf.so.6: cannot open shared object file: No such file or directory
> Unable to dlopen '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA64/molfile/
> graspplugin.so':
> Unable to dlopen plugin file /u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA
> 64/molfile/graspplugin.so
> Unable to open dynamic library '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINU
> XIA64/molfile/grdplugin.so'
> libimf.so.6: cannot open shared object file: No such file or directory
> Unable to dlopen '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA64/molfile/
> grdplugin.so':
> Unable to dlopen plugin file /u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA
> 64/molfile/grdplugin.so
> Unable to open dynamic library '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINU
> XIA64/molfile/gridplugin.so'
> libimf.so.6: cannot open shared object file: No such file or directory
> Unable to dlopen '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA64/molfile/
> gridplugin.so':
> Unable to dlopen plugin file /u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA
> 64/molfile/gridplugin.so
> Unable to open dynamic library '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINU
> XIA64/molfile/gromacsplugin.so'
> libimf.so.6: cannot open shared object file: No such file or directory
> Unable to dlopen '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA64/molfile/
> gromacsplugin.so':
> Unable to dlopen plugin file /u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA
> 64/molfile/gromacsplugin.so
> Unable to open dynamic library '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINU
> XIA64/molfile/lammpsplugin.so'
> libimf.so.6: cannot open shared object file: No such file or directory
> Unable to dlopen '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA64/molfile/
> lammpsplugin.so':
> Unable to dlopen plugin file /u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA
> 64/molfile/lammpsplugin.so
> Unable to open dynamic library '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINU
> XIA64/molfile/mapplugin.so'
> libimf.so.6: cannot open shared object file: No such file or directory
> Unable to dlopen '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA64/molfile/
> mapplugin.so':
> Unable to dlopen plugin file /u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA
> 64/molfile/mapplugin.so
> Unable to open dynamic library '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINU
> XIA64/molfile/mdfplugin.so'
> libimf.so.6: cannot open shared object file: No such file or directory
> Unable to dlopen '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA64/molfile/
> mdfplugin.so':
> Unable to dlopen plugin file /u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA
> 64/molfile/mdfplugin.so
> Unable to open dynamic library '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINU
> XIA64/molfile/mol2plugin.so'
> libimf.so.6: cannot open shared object file: No such file or directory
> Unable to dlopen '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA64/molfile/
> mol2plugin.so':
> Unable to dlopen plugin file /u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA
> 64/molfile/mol2plugin.so
> Unable to open dynamic library '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINU
> XIA64/molfile/moldenplugin.so'
> libimf.so.6: cannot open shared object file: No such file or directory
> Unable to dlopen '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA64/molfile/
> moldenplugin.so':
> Unable to dlopen plugin file /u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA
> 64/molfile/moldenplugin.so
> Unable to open dynamic library '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINU
> XIA64/molfile/msmsplugin.so'
> libimf.so.6: cannot open shared object file: No such file or directory
> Unable to dlopen '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA64/molfile/
> msmsplugin.so':
> Unable to dlopen plugin file /u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA
> 64/molfile/msmsplugin.so
> Unable to open dynamic library '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINU
> XIA64/molfile/namdbinplugin.so'
> libimf.so.6: cannot open shared object file: No such file or directory
> Unable to dlopen '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA64/molfile/
> namdbinplugin.so':
> Unable to dlopen plugin file /u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA
> 64/molfile/namdbinplugin.so
> Unable to open dynamic library '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINU
> XIA64/molfile/parm7plugin.so'
> libimf.so.6: cannot open shared object file: No such file or directory
> Unable to dlopen '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA64/molfile/
> parm7plugin.so':
> Unable to dlopen plugin file /u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA
> 64/molfile/parm7plugin.so
> Unable to open dynamic library '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINU
> XIA64/molfile/parmplugin.so'
> libimf.so.6: cannot open shared object file: No such file or directory
> Unable to dlopen '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA64/molfile/
> parmplugin.so':
> Unable to dlopen plugin file /u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA
> 64/molfile/parmplugin.so
> Unable to open dynamic library '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINU
> XIA64/molfile/pdbplugin.so'
> libimf.so.6: cannot open shared object file: No such file or directory
> Unable to dlopen '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA64/molfile/
> pdbplugin.so':
> Unable to dlopen plugin file /u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA
> 64/molfile/pdbplugin.so
> Unable to open dynamic library '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINU
> XIA64/molfile/phiplugin.so'
> libimf.so.6: cannot open shared object file: No such file or directory
> Unable to dlopen '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA64/molfile/
> phiplugin.so':
> Unable to dlopen plugin file /u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA
> 64/molfile/phiplugin.so
> Unable to open dynamic library '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINU
> XIA64/molfile/pltplugin.so'
> libimf.so.6: cannot open shared object file: No such file or directory
> Unable to dlopen '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA64/molfile/
> pltplugin.so':
> Unable to dlopen plugin file /u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA
> 64/molfile/pltplugin.so
> Unable to open dynamic library '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINU
> XIA64/molfile/pqrplugin.so'
> libimf.so.6: cannot open shared object file: No such file or directory
> Unable to dlopen '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA64/molfile/
> pqrplugin.so':
> Unable to dlopen plugin file /u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA
> 64/molfile/pqrplugin.so
> Unable to open dynamic library '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINU
> XIA64/molfile/psfplugin.so'
> libimf.so.6: cannot open shared object file: No such file or directory
> Unable to dlopen '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA64/molfile/
> psfplugin.so':
> Unable to dlopen plugin file /u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA
> 64/molfile/psfplugin.so
> Unable to open dynamic library '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINU
> XIA64/molfile/raster3dplugin.so'
> libimf.so.6: cannot open shared object file: No such file or directory
> Unable to dlopen '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA64/molfile/
> raster3dplugin.so':
> Unable to dlopen plugin file /u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA
> 64/molfile/raster3dplugin.so
> Unable to open dynamic library '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINU
> XIA64/molfile/rst7plugin.so'
> libimf.so.6: cannot open shared object file: No such file or directory
> Unable to dlopen '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA64/molfile/
> rst7plugin.so':
> Unable to dlopen plugin file /u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA
> 64/molfile/rst7plugin.so
> Unable to open dynamic library '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINU
> XIA64/molfile/spiderplugin.so'
> libimf.so.6: cannot open shared object file: No such file or directory
> Unable to dlopen '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA64/molfile/
> spiderplugin.so':
> Unable to dlopen plugin file /u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA
> 64/molfile/spiderplugin.so
> Unable to open dynamic library '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINU
> XIA64/molfile/stlplugin.so'
> libimf.so.6: cannot open shared object file: No such file or directory
> Unable to dlopen '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA64/molfile/
> stlplugin.so':
> Unable to dlopen plugin file /u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA
> 64/molfile/stlplugin.so
> Unable to open dynamic library '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINU
> XIA64/molfile/tinkerplugin.so'
> libimf.so.6: cannot open shared object file: No such file or directory
> Unable to dlopen '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA64/molfile/
> tinkerplugin.so':
> Unable to dlopen plugin file /u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA
> 64/molfile/tinkerplugin.so
> Unable to open dynamic library '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINU
> XIA64/molfile/webpdbplugin.so'
> libimf.so.6: cannot open shared object file: No such file or directory
> Unable to dlopen '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA64/molfile/
> webpdbplugin.so':
> Unable to dlopen plugin file /u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA
> 64/molfile/webpdbplugin.so
> Unable to open dynamic library '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINU
> XIA64/molfile/xsfplugin.so'
> libimf.so.6: cannot open shared object file: No such file or directory
> Unable to dlopen '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA64/molfile/
> xsfplugin.so':
> Unable to dlopen plugin file /u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA
> 64/molfile/xsfplugin.so
> Unable to open dynamic library '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINU
> XIA64/molfile/xyzplugin.so'
> libimf.so.6: cannot open shared object file: No such file or directory
> Unable to dlopen '/u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA64/molfile/
> xyzplugin.so':
> Unable to dlopen plugin file /u/ioana/vmd-1.8.4a5/vmd184/lib/vmd/plugins/LINUXIA
> 64/molfile/xyzplugin.so
> The pmepot_gui package could not be loaded:
>
> The solvate package could not be loaded:
>
> The autopsf package could not be loaded:
>
> The autoimd package could not be loaded:
> 

-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
Email: johns_at_ks.uiuc.edu                 Phone: 217-244-3349
  WWW: http://www.ks.uiuc.edu/~johns/      Fax: 217-244-6078