VMD-L Mailing List

From: Daeun Noh (daeun.noh_at_stonybrook.edu)
Date: Wed Jun 05 2019 - 17:44:20 CDT

Hello all,
I am a new VMD user and now I am struggling with the program.
I am trying to do SASA calculation of my peptide.
Specifically, I'd like to see the SASA for the side chains of the specific
residue not whole residue in my peptide structure but I don't know how to
type commands.
Are there any ways or commands to specify atom numbers to select only side
chains and measure the SASA?

thank you!

Sincerely,
Daeun