VMD-L Mailing List
From: Norman Geist (norman.geist_at_uni-greifswald.de)
Date: Thu Feb 12 2015 - 02:35:21 CST
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You can use either the “VMD Main->File->Save Coordinates” GUI
or something like:
set sel [atomselect top “resid 5”]
$sel writedcd myres5.dcd
$sel delete
Norman Geist.
From: owner-vmd-l_at_ks.uiuc.edu [mailto:owner-vmd-l_at_ks.uiuc.edu] On Behalf Of Monika Madhavi
Sent: Thursday, February 12, 2015 7:56 AM
To: vmd-l_at_ks.uiuc.edu
Subject: vmd-l: how to select a particular molecule
Dear all,
I need to select all the atoms of a particular water molecule from a dcd file and write it's coordinates to a separate pdb/dcd file. Can I do this using atomselect in vmd tcl? I tried the following command but it doesn't work.
set sel [atomselect top {resid 5}]
Thank you.
Monika
-- W.A.Monika Madhavi Lecturer (Probation), Department of Physics, University of Colombo.
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