VMD-L Mailing List

From: maria goranovic (mariagoranovic_at_gmail.com)
Date: Thu Dec 20 2012 - 09:53:05 CST

Hi John

Hi,
> Can you send us the text messages that VMD prints in the
> text console when it starts up? I'm curious to see if it has
> any warnings about the OpenGL driver, and/or what driver is
> reported as active.

rlwrap: Command not found.
Info) VMD for LINUXAMD64, version 1.9.1 (February 1, 2012)
Info) http://www.ks.uiuc.edu/Research/vmd/
Info) Email questions and bug reports to vmd_at_ks.uiuc.edu
Info) Please include this reference in published work using VMD:
Info) Humphrey, W., Dalke, A. and Schulten, K., `VMD - Visual
Info) Molecular Dynamics', J. Molec. Graphics 1996, 14.1, 33-38.
Info) -------------------------------------------------------------
Info) Multithreading available, 12 CPUs detected.
Info) Free system memory: 62616MB (98%)
Info) Creating CUDA device pool and initializing hardware...
Info) Detected 1 available CUDA accelerator:
Info) [0] Quadro 2000D 4 SM_2.1 @ 1.25 GHz, 1.0GB RAM, KTO, OIO, ZCP
Info) OpenGL renderer: Quadro 2000D/PCIe/SSE2
Info) Features: STENCIL MSAA(16) MDE MTX NPOT PP PS
Info) GLSL rendering mode is NOT available.
Info) Textures: 2-D (18x17), 3-D (18x17x18), Multitexture (4)
Info) Dynamically loaded 2 plugins in directory:
Info) /usr/local/lib/vmd/plugins/LINUXAMD64/molfile
/usr/local/lib/vmd/scripts/tcl8.5 /usr/local/lib/vmd/scripts
/usr/local/lib/lib /Projects/johns/tcl/8.5.6/lib_LINUXAMD64/lib
/usr/local/lib/vmd/scripts/tk8.5 /usr/local/lib/vmd/scripts/tk8.5/ttk
/usr/local/lib/vmd/scripts/vmd /usr/local/lib/vmd/plugins/LINUXAMD64/tcl
/usr/$
/usr/local/lib/vmd/scripts/tcl8.5 /usr/local/lib/vmd/scripts
/usr/local/lib/lib /Projects/johns/tcl/8.5.6/lib_LINUXAMD64/lib
/usr/local/lib/vmd/scripts/tk8.5 /usr/local/lib/vmd/scripts/tk8.5/ttk
/usr/local/lib/vmd/scripts/vmd /usr/local/lib/vmd/plugins/LINUXAMD64/tcl
/usr/$
after#0

> What output do you get if you run this command?:
> cat /proc/driver/nvidia/version
>

NVRM version: NVIDIA UNIX x86_64 Kernel Module 304.51 Tue Sep 18 17:16:56
PDT 2012
GCC version: gcc version 4.6.3 (Ubuntu/Linaro 4.6.3-1ubuntu5)

> Cheers,
> John Stone
> vmd_at_ks.uiuc.edu
>
> On Thu, Dec 20, 2012 at 11:48:03AM +0100, maria goranovic wrote:
> > Hi
> > I am using VMD 1.9.1 on Ubuntu 12.04.1 LTS. VMD was working fine till
> a
> > while ago.
> > Now, when I load up a molecule, I do not see anything displayed as
> Lines.
> > The display is fine if I use any other representation. I have made no
> > changes to my .vmdrc file. It seems that this is a result of some
> ubuntu
> > software upgrade.
> > I am also using Nvidia twinview.
> > Has anyone else had a similar problem?
> > --
> > Maria G.
> > Technical University of Denmark
> > Copenhagen
>
> --
> NIH Center for Macromolecular Modeling and Bioinformatics
> Beckman Institute for Advanced Science and Technology
> University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
> http://www.ks.uiuc.edu/~johns/ Phone: 217-244-3349
> http://www.ks.uiuc.edu/Research/vmd/ Fax: 217-244-6078
> 

-- 
Maria G.
Technical University of Denmark
Copenhagen