VMD-L Mailing List

From: Shyno Mathew (sm3334_at_columbia.edu)
Date: Wed Apr 13 2016 - 20:26:51 CDT

Dear all,

I am trying to compare two proteins using Multiseq. Everything works ok for
the sequence alignment. However, for the structural alignment using STAMP,
I am not getting the QH values when highlighting the proteins as mentioned
here in step 11.

http://www.ks.uiuc.edu/Training/Tutorials/vmd/tutorial-html/node6.html

While trying to color the protein according to structural identity, I am
getting an error! Also, I see a discussion about similar error concluding
there is a bug with Qres portion of multiseq. I am using vmd 1.9.2
Is this bug fixed in the recent versions of vmd?

http://www.ks.uiuc.edu/Research/vmd/mailing_list/vmd-l/23627.html

thanks,
Shyno 

-- 
Shyno Mathew
PhD Candidate
Department of Chemical Engineering
Graduate Assistant
Office of Graduate Student Affairs
The Fu Foundation School Of Engineering and Applied Science
Columbia University