VMD-L Mailing List

From: Kartheek (kartheek.p_at_research.iiit.ac.in)
Date: Sat Sep 03 2011 - 07:18:46 CDT

Hi All,
         I am trying to calculate RDF of a system having nucleic acid in water box,I used VMD built in plugging to plot RDF of Oxygen atoms of nucleic acid back bone VS Oxygen atoms of water.
The plots which it generating doesn't make any sense to me,i tried with different phrase selections, what ever may be the phrase selection it is giving same plots only.Here I am providing an URL for the plot.
Thanks in advance.
http://researchweb.iiit.ac.in/~kartheek.p/rnagr.jpg