VMD-L Mailing List
From: Lars Bruno Hansen (lhansen_at_fysik.dtu.dk)
Date: Tue Mar 11 2003 - 10:16:38 CST
- Next message: John Stone: "Re: bond connectivity for different frames"
- Previous message: Sanjeev B.S.: "Trasperent images"
- In reply to: Sanjeev B.S.: "Trasperent images"
- Next in thread: John Stone: "Re: bond connectivity for different frames"
- Reply: John Stone: "Re: bond connectivity for different frames"
- Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]
dear all,
I have a question regarding the bond connectivity for different
frames of a molecule.
I load in coordinates and bonds like, using the python interpreter
molecule.load('psf',psffile,'pdb',pdbfile)
and for the subsequent frames I use
molecule.read(0,'pdb',tmppdbfile)
molecule.read(0,'psf',tmppsffile)
The coordinates are loaded fine, however it seems like the bonds
for all frames are allways equal to the last psf file loaded.
I have tried the 'beg' and 'end' options to the read command
however this does not seems to have any effects on this.
I have also tried different order of the two read statements.
I use the front panel animate function to cycle though the
frames.
Would this works different if I loaded the frames using eg. the
dcd format.
I use VMD 18a29 on linux.
Any help on this is greatly appreciated,
with best regards
Lars
-- Lars Bruno Hansen, CAMP, Dept. of Physics, Building 307, DTU, DK-2800 Lyngby, Denmark Phone: +45 45 25 32 16 Fax: +45 45 93 23 99 E-mail: lhansen_at_fysik.dtu.dk
- Next message: John Stone: "Re: bond connectivity for different frames"
- Previous message: Sanjeev B.S.: "Trasperent images"
- In reply to: Sanjeev B.S.: "Trasperent images"
- Next in thread: John Stone: "Re: bond connectivity for different frames"
- Reply: John Stone: "Re: bond connectivity for different frames"
- Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]