VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Fri Jan 27 2006 - 12:59:44 CST

Jerry,
  You can install MSMS anywhere you want. You just need to set the
MSMSSERVER environment variable in the Windows sytem settings to the
full pathname of the installed MSMS binary.

  John Stone
  vmd_at_ks.uiuc.edu

On Fri, Jan 27, 2006 at 12:50:20PM -0600, Jerry Ebalunode wrote:
> Hi John,
> I just noticed that the win alpha version vmd supports msms calculations.
> Thanks for including this much wanted feature into winvmd. Could you let us
> know were to place the binary
> -----Original Message-----
> From: owner-vmd-l_at_ks.uiuc.edu [mailto:owner-vmd-l_at_ks.uiuc.edu] On Behalf Of
> John Stone
> Sent: Monday, November 01, 2004 11:51 AM
> To: Osmany Guirola Cruz
> Cc: vmd-l_at_ks.uiuc.edu
> Subject: Re: vmd-l: web script
>
>
> Osmany,
> "convert" will just as easily accept .tga files as .rgb files, so
> the simplest method is to change your command to use target files like this:
> convert -delay 10 -loop 4 snap.*.tga movie.gif
>
> John Stone
> vmd_at_ks.uiuc.edu
>
> On Mon, Nov 01, 2004 at 08:49:53AM -0400, Osmany Guirola Cruz wrote:
> > Hi John
> > ok i put the
> > "render TachyonInternal" in my script mi files have a size greater that
> zero
> > but now how can't i do my animated gif i have usin this commad to do this
> > with the rgb files
> > convert -delay 10 -loop 4 snap.*.rgb movie.gif
> > now the files are tga can i use the same command.. or i have to use
> other.....
> > Another thing i need is a little help on some useful commands for example
> i
> > want that in my gif select some residues with a specific color and rescale
>
> > the viewport ....
> > Thanks
> > Osmany
>
> --
> NIH Resource for Macromolecular Modeling and Bioinformatics
> Beckman Institute for Advanced Science and Technology
> University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
> Email: johns_at_ks.uiuc.edu Phone: 217-244-3349
> WWW: http://www.ks.uiuc.edu/~johns/ Fax: 217-244-6078 

-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
Email: johns_at_ks.uiuc.edu                 Phone: 217-244-3349
  WWW: http://www.ks.uiuc.edu/~johns/      Fax: 217-244-6078