VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Tue Dec 11 2012 - 08:59:37 CST

Tru,
  What happens if you run VMD like this:
vmd -debug

Type "run" at the gdb prompt. When it crashes, type "where"
and report the results back here.

Cheers,
  John Stone
  vmd_at_ks.uiuc.edu

On Tue, Dec 11, 2012 at 12:10:38PM +0100, Tru Huynh wrote:
> On Mon, Dec 10, 2012 at 11:58:57PM +0100, Tru Huynh wrote:
> >
> > Info) VMD for LINUXAMD64, version 1.9.2a15 (October 18, 2012)
> ..
> > Info) /c5/shared/vmd/vmd-1.9.2a15/plugins/LINUXAMD64/molfile
> >
> > Thanks :D
> That success was from a opennx->freenx server, but if I try from
> a plain ssh -Y session, I still get my segfault :(
>
> [tru_at_yippy ~]$ vmd
> Info) VMD for LINUXAMD64, version 1.9.2a15 (October 18, 2012)
> Info) http://www.ks.uiuc.edu/Research/vmd/
> Info) Email questions and bug reports to vmd_at_ks.uiuc.edu
> Info) Please include this reference in published work using VMD:
> Info) Humphrey, W., Dalke, A. and Schulten, K., `VMD - Visual
> Info) Molecular Dynamics', J. Molec. Graphics 1996, 14.1, 33-38.
> Info) -------------------------------------------------------------
> Info) Multithreading available, 16 CPUs detected.
> Info) Free system memory: 128199MB (99%)
> Info) Creating CUDA device pool and initializing hardware...
> Info) Detected 4 available CUDA accelerators:
> Info) [0] GeForce GTX 680 8 SM_3.0 @ 1.14 GHz, 4.0GB RAM, KTO, OIO, ZCP
> Info) [1] GeForce GTX 680 8 SM_3.0 @ 1.14 GHz, 4.0GB RAM, KTO, OIO, ZCP
> Info) [2] GeForce GTX 680 8 SM_3.0 @ 1.14 GHz, 4.0GB RAM, KTO, OIO, ZCP
> Info) [3] GeForce GTX 680 8 SM_3.0 @ 1.14 GHz, 4.0GB RAM, KTO, OIO, ZCP
> Warning) Detected X11 'Composite' extension: if incorrect display occurs
> Warning) try disabling this optional X server feature.
> Info) OpenGL renderer: GeForce 210/PCI/SSE2
> Info) Features: STENCIL MSAA(4) MDE MTX NPOT PP PS GLSL(OVFG)
> XRequest.143: BadLength (poly request too large or internal Xlib length error) 0x1d00046
> Warning) GPU driver failed to compile shader:
> Warning) /c5/shared/vmd/vmd-1.9.2a15/shaders/vmd
> Warning) This GPU/driver is buggy, or doesn't fully implement GLSL.
> Warning) Set environment variable VMDGLSLVERBOSE for more info.
> Info) GLSL rendering mode is NOT available.
> Info) Textures: 2-D (8192x8192), 3-D (2048x2048x2048), Multitexture (4)
> Segmentation fault
>
> Tru
> --
> Dr Tru Huynh | http://www.pasteur.fr/recherche/unites/Binfs/
> mailto:tru_at_pasteur.fr | tel/fax +33 1 45 68 87 37/19
> Institut Pasteur, 25-28 rue du Docteur Roux, 75724 Paris CEDEX 15 France 

-- 
NIH Center for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
http://www.ks.uiuc.edu/~johns/           Phone: 217-244-3349
http://www.ks.uiuc.edu/Research/vmd/       Fax: 217-244-6078