VMD-L Mailing List

From: priyodorshi satpati (psatpati_at_gmail.com)
Date: Tue Oct 20 2009 - 04:08:12 CDT

Dear All,

My system is phosphate and Mg into a water box. The phosphate is at
the center of the box. I want to fix the phosphate in place and move
the Mg atom away from the phosphate (along the vector joining
Phosphorous and Mg). Lets say i want to move Mg 0.15 Angstrom at each
step and save the corresponding pdb file. Eventually i will move the
Mg 1.5 angs and i will save 10 pdb files.

Please let me know how can i do it.

Thanks and regards

Priyadarshi 

-- 
Dr. Priyadarshi Satpati
Biocomputing and Structure research Group,
Laboratoire de Biochimie,
Ecole Polytechnique,
91128 Palaiseau, France
Phone :
          (Off)  : +33/(0)1 69 33 48 94
          (Mob) : +33/(0)6 27 75 56 49
          (Res) : +33/(0)177069139