VMD-L Mailing List

From: Keshab Thapa (keshab.thapa_at_ndsu.edu)
Date: Sun Nov 12 2017 - 23:44:48 CST

Dear VMD and NAMD Community,

I'm working on SMD simulation using constant velocity pulling and run for 200 ps. I'm able to get the output file, which has the force developed during constant pulling. Also, the DCD and PSF files are COM.DCD and COM.psf, respectively. I've loaded above two files on VMD, so we can see the final conformation, but I wanted to develop LOAD vs DISPLACEMENT plot? Is there any VMD plugin or NAMD script? NAMD 2.9 and VMD 1.9.3 have been used.

Thank you in advance!

Keshab Thapa
Grad Research Assistant
North Dakota State University