VMD-L Mailing List
From: Mohan maruthi sena (maruthi.sena_at_gmail.com)
Date: Fri Apr 19 2013 - 00:34:56 CDT
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Hi all,
I have generated some random xyz coordinates as shown below :
C -122.30999345 -226.62878095 14260.21711297
C -193.01299627 170.48848092 14389.18215904
C 165.21396622 197.5466634 14652.56309524
C -253.07189228 47.69650083 14795.76483949
C 138.40242423 -217.17529284 15009.15036761
C -257.02414619 16.09121275 15159.71246634
C 255.52035938 32.08870204 15386.64671586
C -144.70465973 213.02793316 15431.3743127
......................................................................................................................................
......................................................................................................................................
I have bunch of proteins , I want to place move geometrical center of
these proteins to the above mentioned random points then, after moving all
the centers of proteins to above points. I want to save them in one pdb
file. When i do so , i get the following error,
PDB WRITE ERROR: Position, occupancy, or b-factor (beta) for atom 0
cannot be written in PDB format.
By going through vmd mailing list I came to know that, if magnitude of
coordinates is high the it will give these error. I want to save
coordinates without transformation. If we can do by transformation , what
kind of transformation need to be applied.
**These random coordinates has a geometrical shape and some constraints
between each point. These cannot be changed
please suggest me a way,
Thanks,
Mohan
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