VMD-L Mailing List
From: Mert Gür (gurmert_at_gmail.com)
Date: Thu Aug 18 2011 - 10:01:00 CDT
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Dear all,
I only have the carbon alpha coordinates of an adenylate kinase MD
trajectory.
I would like to draw/depict the trajectory in VMD with New Ribbons or New
Carton representation so that I can see the secondary structures visually.
However, this seems not to be possible. The closest I get to what I want is
to select the tube representation.
Does anyone have a solution for this?
I have the starting full atomistic pdb and psf files of the trajectory.
Best,
Mert
- Next message: John Stone: "Re: How can I draw secondary structures if I only have the carbon alpha coordinates"
- Previous message: Vlad Cojocaru: "converting coarse grained POPC membranes to atomistic representation (AMBER, GAFF)"
- Next in thread: John Stone: "Re: How can I draw secondary structures if I only have the carbon alpha coordinates"
- Reply: John Stone: "Re: How can I draw secondary structures if I only have the carbon alpha coordinates"
- Reply: Tim Travers: "Re: How can I draw secondary structures if I only have the carbon alpha coordinates"
- Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]
