VMD-L Mailing List

From: Axel Kohlmeyer (akohlmey_at_gmail.com)
Date: Tue Feb 23 2010 - 05:44:27 CST

On Tue, Feb 23, 2010 at 6:43 AM, Robabeh Moosavi <r_moosavi_at_iasbs.ac.ir> wrote:
> Dear vmd users,
>
> I have a problem when I want to visualize dump files created by Lammps by
> vmd package, When I run vmd dump.filename(a file which is created by
> Lammps), I got this error.

....and you *should* get this error. PEBCAC.

read the the lines prefixed with ERROR) (it is for a reason)
and then the vmd documentation.

axel.

> Info) VMD for LINUX, version 1.8.7 (August 1, 2009)
> Info) http://www.ks.uiuc.edu/Research/vmd/
> Info) Email questions and bug reports to vmd_at_ks.uiuc.edu
> Info) Please include this reference in published work using VMD:
> Info)    Humphrey, W., Dalke, A. and Schulten, K., `VMD - Visual
> Info)    Molecular Dynamics', J. Molec. Graphics 1996, 14.1, 33-38.
> Info) -------------------------------------------------------------
> Info) Multithreading available, 2 CPUs detected.
> Info) Free system memory: 2786MB (92%)
> Info) No CUDA accelerator devices available.
> Warning) Detected X11 'Composite' extension: if incorrect display occurs
> Warning) try disabling this optional X server feature.
> Info) OpenGL renderer: Software Rasterizer
> Info)   Features: STENCIL MDE CVA MTX NPOT PP PS GLSL(OVF)
> Info)   Full GLSL rendering mode is available.
> Info)   Textures: 2-D (4096x4096), 3-D (256x256x256), Multitexture (8)
> Info) File loading in progress, please wait.
> ERROR) Unable to determine file type for file 'dump.vibration'.  Assuming
> pdb.
> PDB file 'dump.vibration' contains no atoms.
> ERROR) Could not read file dump.vibration
> ERROR) Loading of startup molecule files aborted.
> vmd >
>
> Thanks in advance,
> Robabeh
>
>
> 

-- 
Dr. Axel Kohlmeyer    akohlmey_at_gmail.com
http://sites.google.com/site/akohlmey/
Institute for Computational Molecular Science
Temple University, Philadelphia PA, USA.