VMD-L Mailing List

From: Axel Kohlmeyer (akohlmey_at_gmail.com)
Date: Mon May 16 2011 - 09:43:13 CDT

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On Mon, May 16, 2011 at 9:52 AM, beyza bilgic <beyzaxbilgic_at_gmail.com> wrote:
> Dear all,
> Is there a way of drawing atoms which are shared with the neighboring cells
> ?

you can draw almost anything, but not necessarily automatically.
you'd need to write a little script that identifies those atoms or
come up with a smart selection string. however, keep in mind that
VMD hails from bio simulations, so crystals are not what it is optimized for.

axel.

> (for users who are familiar with jMol, just like the view of symmetry >
> reload {444 666 1} + display {555} )
> Thanks
> Beyza

-- 
Dr. Axel Kohlmeyer
akohlmey_at_gmail.com  http://goo.gl/1wk0
Institute for Computational Molecular Science
Temple University, Philadelphia PA, USA.

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