VMD-L Mailing List
From: Vlad Cojocaru (vlad.cojocaru_at_mpi-muenster.mpg.de)
Date: Tue Aug 21 2012 - 11:06:01 CDT
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- Reply: John Stone: "Re: Error building VMD plugins from CVS 21.08.2012"
- Reply: Vlad Cojocaru: "Re: Error building VMD plugins from CVS 21.08.2012"
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Dear all,
I am trying to compile the vmd cvs code downloaded today and while
building the plugins, I get the error below (build script also provided
below).
It looks as if some gif files are missing .... Does anybody know how to
fix this ?
Thanks
Vlad
----------------script used to build plugins ----------------
#!/bin/bash
export TCLINC="-I/usr/include"
export TCLLIB="-L/usr/lib64"
export NETCDFINC="-I/usr/include"
export NETCDFLIB="-I/usr/lib64"
make clean
make LINUXAMD64 TCLINC=$TCLINC TCLLIB=$TCLLIB NETCDFINC=$NETCDFINC
NETCDFLIB=$NETCDFLIB 2>&1 | tee make.log
export PLUGINDIR="/usr/local/apps/vmd/2012-08-21-SRC/lib/plugins"
make distrib 2>&1 | tee make_distrib.log
exit
-----------------error--------------------
Copying molfile plugins to
/usr/local/apps/vmd/2012-08-21-SRC/lib/plugins destination area
abinitplugin.so ...
biomoccaplugin.so ...
cpmdplugin.so ...
psfplugin.so ...
pdbplugin.so ...
dcdplugin.so ...
babelplugin.so ...
gromacsplugin.so ...
parmplugin.so ...
crdplugin.so ...
namdbinplugin.so ...
binposplugin.so ...
graspplugin.so ...
msmsplugin.so ...
stlplugin.so ...
offplugin.so ...
cubeplugin.so ...
edmplugin.so ...
ccp4plugin.so ...
dsn6plugin.so ...
brixplugin.so ...
pltplugin.so ...
raster3dplugin.so ...
parm7plugin.so ...
rst7plugin.so ...
tinkerplugin.so ...
uhbdplugin.so ...
vaspchgcarplugin.so ...
vaspparchgplugin.so ...
vaspposcarplugin.so ...
vaspoutcarplugin.so ...
vaspxdatcarplugin.so ...
vaspxmlplugin.so ...
dlpolyplugin.so ...
lammpsplugin.so ...
vtfplugin.so ...
xyzplugin.so ...
corplugin.so ...
moldenplugin.so ...
phiplugin.so ...
pbeqplugin.so ...
grdplugin.so ...
situsplugin.so ...
dxplugin.so ...
spiderplugin.so ...
mapplugin.so ...
avsplugin.so ...
fs4plugin.so ...
pqrplugin.so ...
mol2plugin.so ...
gridplugin.so ...
carplugin.so ...
mdfplugin.so ...
gamessplugin.so ...
xsfplugin.so ...
bgfplugin.so ...
xbgfplugin.so ...
jsplugin.so ...
dtrplugin.so ...
maeffplugin.so ...
basissetplugin.so ...
webpdbplugin.so ...
netcdfplugin.so ...
hoomdplugin.so ...
dmsplugin.so ...
libmolfile_plugin.a ...
libmolfile_plugin.h ...
libmolfile_plugin.lib ...
libmolfile_plugin.h ...
Copying apbsrun 1.3 files to
/usr/local/apps/vmd/2012-08-21-SRC/lib/plugins/noarch/tcl/apbsrun1.3
Copying atomedit 1.0 files to
/usr/local/apps/vmd/2012-08-21-SRC/lib/plugins/noarch/tcl/atomedit1.0
This is pdfTeX, Version 3.1415926-2.3-1.40.12 (TeX Live 2011)
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LaTeX Warning: Reference `fig:simsettings-GUI' on page 4 undefined on
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<use simsettings-GUI.pdf>
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[4 <./autoimd-GUI.pdf>]
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Output written on ug.pdf (8 pages, 319257 bytes).
Transcript written on ug.log.
This is pdfTeX, Version 3.1415926-2.3-1.40.12 (TeX Live 2011)
restricted \write18 enabled.
entering extended mode
(./ug.tex
LaTeX2e <2009/09/24>
Babel <v3.8l> and hyphenation patterns for english, dumylang,
nohyphenation, ge
rman-x-2009-06-19, ngerman-x-2009-06-19, afrikaans, ancientgreek,
ibycus, arabi
c, armenian, basque, bulgarian, catalan, pinyin, coptic, croatian,
czech, danis
h, dutch, ukenglish, usenglishmax, esperanto, estonian, ethiopic, farsi,
finnis
h, french, galician, german, ngerman, swissgerman, monogreek, greek,
hungarian,
icelandic, assamese, bengali, gujarati, hindi, kannada, malayalam,
marathi, or
iya, panjabi, tamil, telugu, indonesian, interlingua, irish, italian,
kurmanji,
lao, latin, latvian, lithuanian, mongolian, mongolianlmc, bokmal,
nynorsk, pol
ish, portuguese, romanian, russian, sanskrit, serbian, serbianc, slovak,
sloven
ian, spanish, swedish, turkish, turkmen, ukrainian, uppersorbian, welsh,
loaded
.
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Document Class: article 2007/10/19 v1.4h Standard LaTeX document class
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(/usr/share/texmf/tex/latex/graphics/graphicx.sty
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(/usr/share/texmf/tex/latex/hyperref/pd1enc.def)
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Package hyperref Message: Driver (autodetected): hpdftex.
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(./ug.aux) (/usr/share/texmf/tex/context/base/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
) (/usr/share/texmf/tex/latex/oberdiek/epstopdf-base.sty
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(/usr/share/texmf/tex/latex/hyperref/nameref.sty
(/usr/share/texmf/tex/generic/oberdiek/gettitlestring.sty)) (./ug.out)
(./ug.out) (./ug_title.tex)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.ma
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Underfull \hbox (badness 10000) in paragraph at lines 10--11
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<autoimd-diagram.pdf, id=55, 301.125pt x 288.07625pt>
<use autoimd-diagram.pdf> [3 <./autoimd-diagram.pdf>]
Underfull \hbox (badness 10000) in paragraph at lines 78--79
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Underfull \hbox (badness 10000) in paragraph at lines 85--86
<simsettings-GUI.pdf, id=84, 543.02875pt x 443.6575pt>
<use simsettings-GUI.pdf>
Underfull \hbox (badness 10000) in paragraph at lines 91--92
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[4 <./autoimd-GUI.pdf>]
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Underfull \hbox (badness 10000) in paragraph at lines 118--119
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[5 <./simsettings-GUI.pdf>]
Underfull \hbox (badness 10000) in paragraph at lines 130--131
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Underfull \hbox (badness 10000) in paragraph at lines 140--141
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[6]
Underfull \hbox (badness 10000) in paragraph at lines 194--195
Underfull \hbox (badness 10000) in paragraph at lines 207--208
[7]
Underfull \hbox (badness 10000) in paragraph at lines 254--255
) [8] (./ug.aux) )
(see the transcript file for additional
information)</usr/share/texmf/fonts/typ
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Output written on ug.pdf (8 pages, 322174 bytes).
Transcript written on ug.log.
Copying autoimd 1.7 files to
/usr/local/apps/vmd/2012-08-21-SRC/lib/plugins/noarch/tcl/autoimd1.7
Copying autoionize 1.3 files to
/usr/local/apps/vmd/2012-08-21-SRC/lib/plugins/noarch/tcl/autoionize1.3
Copying bendix 1.0 files to
/usr/local/apps/vmd/2012-08-21-SRC/lib/plugins/noarch/tcl/bendix1.0
cp: cannot stat `doc/GUI-tips.gif': No such file or directory
cp: cannot stat `doc/Monsieur_Bendix_smaller_still.gif': No such file or
directory
make[1]: *** [distrib] Error 1
make: *** [distrib] Error 1
-- Dr. Vlad Cojocaru Max Planck Institute for Molecular Biomedicine Department of Cell and Developmental Biology Röntgenstrasse 20, 48149 Münster, Germany Tel: +49-251-70365-324; Fax: +49-251-70365-399 Email: vlad.cojocaru[at]mpi-muenster.mpg.de http://www.mpi-muenster.mpg.de/research/teams/groups/rgcojocaru
- Next message: John Stone: "Re: Error building VMD plugins from CVS 21.08.2012"
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