From: Vlad Cojocaru (vlad.cojocaru_at_mpi-muenster.mpg.de)
Date: Tue Aug 21 2012 - 11:06:01 CDT

Dear all,

I am trying to compile the vmd cvs code downloaded today and while
building the plugins, I get the error below (build script also provided
below).
It looks as if some gif files are missing .... Does anybody know how to
fix this ?

Thanks
Vlad

----------------script used to build plugins ----------------
#!/bin/bash

export TCLINC="-I/usr/include"
export TCLLIB="-L/usr/lib64"

export NETCDFINC="-I/usr/include"
export NETCDFLIB="-I/usr/lib64"

make clean
make LINUXAMD64 TCLINC=$TCLINC TCLLIB=$TCLLIB NETCDFINC=$NETCDFINC
NETCDFLIB=$NETCDFLIB 2>&1 | tee make.log
export PLUGINDIR="/usr/local/apps/vmd/2012-08-21-SRC/lib/plugins"
make distrib 2>&1 | tee make_distrib.log

exit

-----------------error--------------------
Copying molfile plugins to
/usr/local/apps/vmd/2012-08-21-SRC/lib/plugins destination area
     abinitplugin.so ...
     biomoccaplugin.so ...
     cpmdplugin.so ...
     psfplugin.so ...
     pdbplugin.so ...
     dcdplugin.so ...
     babelplugin.so ...
     gromacsplugin.so ...
     parmplugin.so ...
     crdplugin.so ...
     namdbinplugin.so ...
     binposplugin.so ...
     graspplugin.so ...
     msmsplugin.so ...
     stlplugin.so ...
     offplugin.so ...
     cubeplugin.so ...
     edmplugin.so ...
     ccp4plugin.so ...
     dsn6plugin.so ...
     brixplugin.so ...
     pltplugin.so ...
     raster3dplugin.so ...
     parm7plugin.so ...
     rst7plugin.so ...
     tinkerplugin.so ...
     uhbdplugin.so ...
     vaspchgcarplugin.so ...
     vaspparchgplugin.so ...
     vaspposcarplugin.so ...
     vaspoutcarplugin.so ...
     vaspxdatcarplugin.so ...
     vaspxmlplugin.so ...
     dlpolyplugin.so ...
     lammpsplugin.so ...
     vtfplugin.so ...
     xyzplugin.so ...
     corplugin.so ...
     moldenplugin.so ...
     phiplugin.so ...
     pbeqplugin.so ...
     grdplugin.so ...
     situsplugin.so ...
     dxplugin.so ...
     spiderplugin.so ...
     mapplugin.so ...
     avsplugin.so ...
     fs4plugin.so ...
     pqrplugin.so ...
     mol2plugin.so ...
     gridplugin.so ...
     carplugin.so ...
     mdfplugin.so ...
     gamessplugin.so ...
     xsfplugin.so ...
     bgfplugin.so ...
     xbgfplugin.so ...
     jsplugin.so ...
     dtrplugin.so ...
     maeffplugin.so ...
     basissetplugin.so ...
     webpdbplugin.so ...
     netcdfplugin.so ...
     hoomdplugin.so ...
     dmsplugin.so ...
     libmolfile_plugin.a ...
     libmolfile_plugin.h ...
     libmolfile_plugin.lib ...
     libmolfile_plugin.h ...
Copying apbsrun 1.3 files to
/usr/local/apps/vmd/2012-08-21-SRC/lib/plugins/noarch/tcl/apbsrun1.3
Copying atomedit 1.0 files to
/usr/local/apps/vmd/2012-08-21-SRC/lib/plugins/noarch/tcl/atomedit1.0
This is pdfTeX, Version 3.1415926-2.3-1.40.12 (TeX Live 2011)
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entering extended mode
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LaTeX2e <2009/09/24>
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czech, danis
h, dutch, ukenglish, usenglishmax, esperanto, estonian, ethiopic, farsi,
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(/usr/share/texmf/tex/latex/hyperref/hpdftex.def
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<autoimd-GUI.pdf, id=45, 431.6125pt x 298.11375pt> <use autoimd-GUI.pdf>

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<use simsettings-GUI.pdf>
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[4 <./autoimd-GUI.pdf>]
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) [8] (./ug.aux)

Package rerunfilecheck Warning: File `ug.out' has changed.
(rerunfilecheck) Rerun to get outlines right
(rerunfilecheck) or use package `bookmark'.

LaTeX Warning: There were undefined references.

LaTeX Warning: Label(s) may have changed. Rerun to get cross-references
right.

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Output written on ug.pdf (8 pages, 319257 bytes).
Transcript written on ug.log.
This is pdfTeX, Version 3.1415926-2.3-1.40.12 (TeX Live 2011)
  restricted \write18 enabled.
entering extended mode
(./ug.tex
LaTeX2e <2009/09/24>
Babel <v3.8l> and hyphenation patterns for english, dumylang,
nohyphenation, ge
rman-x-2009-06-19, ngerman-x-2009-06-19, afrikaans, ancientgreek,
ibycus, arabi
c, armenian, basque, bulgarian, catalan, pinyin, coptic, croatian,
czech, danis
h, dutch, ukenglish, usenglishmax, esperanto, estonian, ethiopic, farsi,
finnis
h, french, galician, german, ngerman, swissgerman, monogreek, greek,
hungarian,
  icelandic, assamese, bengali, gujarati, hindi, kannada, malayalam,
marathi, or
iya, panjabi, tamil, telugu, indonesian, interlingua, irish, italian,
kurmanji,
  lao, latin, latvian, lithuanian, mongolian, mongolianlmc, bokmal,
nynorsk, pol
ish, portuguese, romanian, russian, sanskrit, serbian, serbianc, slovak,
sloven
ian, spanish, swedish, turkish, turkmen, ukrainian, uppersorbian, welsh,
loaded
.
(/usr/share/texmf/tex/latex/base/article.cls
Document Class: article 2007/10/19 v1.4h Standard LaTeX document class
(/usr/share/texmf/tex/latex/base/size10.clo))
(/usr/share/texmf/tex/latex/graphics/graphicx.sty
(/usr/share/texmf/tex/latex/graphics/keyval.sty)
(/usr/share/texmf/tex/latex/graphics/graphics.sty
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(/usr/share/texmf/tex/latex/latexconfig/graphics.cfg)
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(/usr/lib/texmf/tex/latex/html/html.sty
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(/usr/share/texmf/tex/generic/ifxetex/ifxetex.sty)
(/usr/share/texmf/tex/latex/oberdiek/kvoptions.sty)
(/usr/share/texmf/tex/latex/hyperref/pd1enc.def)
(/usr/share/texmf/tex/latex/latexconfig/hyperref.cfg)
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Package hyperref Message: Driver (autodetected): hpdftex.

(/usr/share/texmf/tex/latex/hyperref/hpdftex.def
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(./ug.aux) (/usr/share/texmf/tex/context/base/supp-pdf.mkii
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) (/usr/share/texmf/tex/latex/oberdiek/epstopdf-base.sty
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(/usr/share/texmf/tex/latex/hyperref/nameref.sty
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(./ug.out) (./ug_title.tex)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.ma
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<use autoimd-diagram.pdf> [3 <./autoimd-diagram.pdf>]
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<autoimd-GUI.pdf, id=82, 431.6125pt x 298.11375pt> <use autoimd-GUI.pdf>
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<simsettings-GUI.pdf, id=84, 543.02875pt x 443.6575pt>
<use simsettings-GUI.pdf>
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[4 <./autoimd-GUI.pdf>]
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[5 <./simsettings-GUI.pdf>]
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[6]
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) [8] (./ug.aux) )
(see the transcript file for additional
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Output written on ug.pdf (8 pages, 322174 bytes).
Transcript written on ug.log.
Copying autoimd 1.7 files to
/usr/local/apps/vmd/2012-08-21-SRC/lib/plugins/noarch/tcl/autoimd1.7
Copying autoionize 1.3 files to
/usr/local/apps/vmd/2012-08-21-SRC/lib/plugins/noarch/tcl/autoionize1.3
Copying bendix 1.0 files to
/usr/local/apps/vmd/2012-08-21-SRC/lib/plugins/noarch/tcl/bendix1.0
cp: cannot stat `doc/GUI-tips.gif': No such file or directory
cp: cannot stat `doc/Monsieur_Bendix_smaller_still.gif': No such file or
directory
make[1]: *** [distrib] Error 1
make: *** [distrib] Error 1

-- 
Dr. Vlad Cojocaru
Max Planck Institute for Molecular Biomedicine
Department of Cell and Developmental Biology
Röntgenstrasse 20, 48149 Münster, Germany
Tel: +49-251-70365-324; Fax: +49-251-70365-399
Email: vlad.cojocaru[at]mpi-muenster.mpg.de
http://www.mpi-muenster.mpg.de/research/teams/groups/rgcojocaru