VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Fri Nov 22 2013 - 23:54:10 CST

Hi,
  Can you send me a copy of the .xtc file that's giving you problems?
This may be a bug in VMD 1.9.1 that we have already fixed in VMD 1.9.2,
or perhaps not, but if you provide us with a copy of the problematic
input file, we can try it out and see if we encounter the same problem
you're having or not.

Cheers,
  John Stone
  vmd_at_ks.uiuc.edu

On Wed, Nov 13, 2013 at 07:55:46PM -0700, jayant james wrote:
> Hi!
> Using gromacs 4.0.5, I prepared an output trajectory file of a helix (14
> amino acids in length) in a protein. The protein has been simulated for
> 10ns. I load the helix.xtc file onto VMD 1.9.1 (platform is windows 8) to
> perform a timeline analysis .
> I load the helix.xtc file (file size 123 KB) to VMD and go to the timeline
> module and click it. The programs waits for 2-3 seconds and I get this
> message winvmd has stopped working!
> I would appreciate your feedback in overcoming this issue.
> Thank you
> JJJ 

-- 
NIH Center for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
http://www.ks.uiuc.edu/~johns/           Phone: 217-244-3349
http://www.ks.uiuc.edu/Research/vmd/